Gene
| Gene Model ID | pfu_aug2.0_586.1_20944 |
|---|---|
| Locus | scaffold586.1 : 162025 ... 184645 : - |
| To GenomeBrowser | scaffold586.1:162025..184645 |
| Genes list of scaffold | scaffold586.1 |
| Synonym | pfu_aug1.0_35492.1_62819 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_586.1_20944.t1 | 5 | 1 | Gal_Lectin | 59 | 124 | 4.0e-19 | 68.7 | 1.0e-12 | 5.1e-09 | 36.3 |
| pfu_aug2.0_586.1_20944.t1 | 5 | 2 | Gal_Lectin | 145 | 214 | 4.0e-19 | 68.7 | 3.3e-12 | 1.6e-08 | 34.6 |
| pfu_aug2.0_586.1_20944.t1 | 2 | 1 | TSP_1 | 231 | 280 | 1.5e-17 | 63.4 | 2.0e-15 | 9.9e-12 | 44.7 |
| pfu_aug2.0_586.1_20944.t1 | 5 | 3 | Gal_Lectin | 269 | 283 | 4.0e-19 | 68.7 | 3.0 | 15000.0 | -5.3 |
| pfu_aug2.0_586.1_20944.t1 | 5 | 4 | Gal_Lectin | 372 | 451 | 4.0e-19 | 68.7 | 1.3e-09 | 6.2e-06 | 26.4 |
| pfu_aug2.0_586.1_20944.t1 | 2 | 2 | TSP_1 | 468 | 517 | 1.5e-17 | 63.4 | 1.3e-08 | 6.5e-05 | 22.9 |
| pfu_aug2.0_586.1_20944.t1 | 5 | 5 | Gal_Lectin | 503 | 555 | 4.0e-19 | 68.7 | 0.5 | 2500.0 | -1.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_586.1_20944.t1 | gi|734605360|ref|XP_010729778.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 2-like, partial [Larimichthys crocea] | 7.0e-14 |
| pfu_aug2.0_586.1_20944.t1 | gi|260803770|ref|XP_002596762.1| | hypothetical protein BRAFLDRAFT_211641 [Branchiostoma floridae] | 1.0e-13 |
| pfu_aug2.0_586.1_20944.t1 | gi|617565201|ref|XP_007516708.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 18 [Erinaceus europaeus] | 2.0e-13 |
| pfu_aug2.0_586.1_20944.t1 | gi|700423661|ref|XP_009950199.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 18 [Leptosomus discolor] | 3.0e-13 |
| pfu_aug2.0_586.1_20944.t1 | gi|513203600|ref|XP_004944310.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 18 isoform X2 [Gallus gallus] | 3.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_586.1_20944.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_586.1_20944.t1 atggcaaacccaaatccaaactgccagcgtcgaagccaaaggaagcaagagctgatttgtggttatctattatttcagag gcagaaaggtttgttggggtgttatcgcaattattgcgatggatattcagtaaaactttactgtaaaagcctcaccccaa agtataaacttgtcttagaggatgttatctacgggtctgtcaatgatcaatgtggatggaactcccaagaaacctgcact gttagaaacacaacggaagtcataaacagcgcatgtgcaggaaaagcctcgtgtacgatcaaggtggccagcgaaagctt aggagacgattgtggaactgagaacaatacattacgaattaaaatttcatgttaccgtaattattgtgatggatattcag taaaactttactgcaaaagcctcacccaaaagtataaattagtcatagaggatgttatctacgggtctgtctatgatcaa tgtggatggaacttagaagaaacctgcactgttagcaacacaacggaagtcataaacagcgcatgtgcaggaaaagcttc gtgtacgatcaaggtggccagcgaaagcttaggagacgattgtggaactgagaacaatacattacggattaaaatttcat gtattaaaacgtcgaaatcagaaaatatagtcttagatggctggtggggatcatggtcacattggagctcatgcgacgtc acgtgcaatggcggaacaaaatataggtcaaggtcatgtgatgaccccgctccagcaaatggcggcaacgattgtcgggg aaattcaacctcatcagagatttgtaattcaaatccatgtaaagctaccacgtcaggatcagaaaaccaatgctgctggt gcgaaggtaaacctcccagacagaatgttacagacgaagaattaaaaatcaggaaggagaagatagaatcaaccctgtac atagataaagagaaattatcatcgacgctgagaaagaaaatatccgcccatgataacagaacttcctctgttgccatagg aactgtcgccgtggcatttctcaccattgtaacaaggtattacatatcctgcgaaggatatgacgtcaatctgagctgta agtacacaaatcccccatacacaatgataacattggatgacgtggaatatggatccttcgttggaatttgtgatgagatc accaccaactgcacgagttccatcgccttctctcagcttattcacgcctgtgaaaataaatcatcttgcacctttcaagt tctgtctactgtatatggtggatcttactgcgttacaggtgcaaataatgccatcagggtcaaatattcatgtgttgctg ccacgtctgttgcggcggatctcatacttgatgggtggtggagtacctggttgccgtggagtccctgctctgccaccatc agtggaactaccggaactaaatctcgaaaccgcacgtgcacggatccggcaccaaacaatggatttgactgtaaaggtgc aggttcagaggacgccagttgcactgcagatgaaacgacaacattggcggggacttgctgttcctgtccttcctcagctg acgccaacattacatcagaagaacttcagaacaaaatagctgaaatgaagaacgaattgacggtaaacaaacatgaactg tcgtcatcagtccggaaaaagacgtcagcggcagacgatagagcttcctccgttgccatgggaacggttgccgtggtatt cctcacatttttcactgtaggaattattgggatggatatgaaacgaatactagatgcctcgaaaactgtatggaaatctg tcaaggggtggaccacgaagaaaccaaaataa |
|
Protein
| Protein ID | pfu_aug2.0_586.1_20944.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_586.1_20944.t1 MANPNPNCQRRSQRKQELICGYLLFQRQKGLLGCYRNYCDGYSVKLYCKSLTPKYKLVLEDVIYGSVNDQCGWNSQETCT VRNTTEVINSACAGKASCTIKVASESLGDDCGTENNTLRIKISCYRNYCDGYSVKLYCKSLTQKYKLVIEDVIYGSVYDQ CGWNLEETCTVSNTTEVINSACAGKASCTIKVASESLGDDCGTENNTLRIKISCIKTSKSENIVLDGWWGSWSHWSSCDV TCNGGTKYRSRSCDDPAPANGGNDCRGNSTSSEICNSNPCKATTSGSENQCCWCEGKPPRQNVTDEELKIRKEKIESTLY IDKEKLSSTLRKKISAHDNRTSSVAIGTVAVAFLTIVTRYYISCEGYDVNLSCKYTNPPYTMITLDDVEYGSFVGICDEI TTNCTSSIAFSQLIHACENKSSCTFQVLSTVYGGSYCVTGANNAIRVKYSCVAATSVAADLILDGWWSTWLPWSPCSATI SGTTGTKSRNRTCTDPAPNNGFDCKGAGSEDASCTADETTTLAGTCCSCPSSADANITSEELQNKIAEMKNELTVNKHEL SSSVRKKTSAADDRASSVAMGTVAVVFLTFFTVGIIGMDMKRILDASKTVWKSVKGWTTKKPK |
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