Gene
| Gene Model ID | pfu_aug2.0_586.1_20945 |
|---|---|
| Locus | scaffold586.1 : 186777 ... 202128 : - |
| To GenomeBrowser | scaffold586.1:186777..202128 |
| Genes list of scaffold | scaffold586.1 |
| Synonym | pfu_aug1.0_7054.1_38454 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_586.1_20945.t1 | 2 | 1 | Gal_Lectin | 17 | 82 | 1.2e-06 | 28.7 | 2.3e-10 | 1.2e-06 | 28.7 |
| pfu_aug2.0_586.1_20945.t1 | 2 | 1 | TSP_1 | 35 | 39 | 1.7e-10 | 40.8 | 2.4 | 12000.0 | -3.5 |
| pfu_aug2.0_586.1_20945.t1 | 2 | 2 | TSP_1 | 100 | 149 | 1.7e-10 | 40.8 | 3.4e-14 | 1.7e-10 | 40.8 |
| pfu_aug2.0_586.1_20945.t1 | 2 | 2 | Gal_Lectin | 132 | 190 | 1.2e-06 | 28.7 | 3.0 | 15000.0 | -9.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_586.1_20945.t1 | gi|268054309|gb|ACY92641.1| | SCO-spondin [Saccoglossus kowalevskii] | 5.0e-14 |
| pfu_aug2.0_586.1_20945.t1 | gi|505841406|ref|XP_004614215.1| | PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 8, partial [Sorex araneus] | 8.0e-13 |
| pfu_aug2.0_586.1_20945.t1 | gi|551514309|ref|XP_005808665.1| | PREDICTED: netrin receptor UNC5D-like [Xiphophorus maculatus] | 1.0e-12 |
| pfu_aug2.0_586.1_20945.t1 | gi|551506908|ref|XP_005804985.1| | PREDICTED: LOW QUALITY PROTEIN: SCO-spondin-like [Xiphophorus maculatus] | 1.0e-12 |
| pfu_aug2.0_586.1_20945.t1 | gi|617389513|ref|XP_007549027.1| | PREDICTED: netrin receptor UNC5D [Poecilia formosa] | 1.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_586.1_20945.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_586.1_20945.t1 atgagcggccaaatcagtccttatgatgtcattccttatcaattgtttatcgatgacgtcatctacgggagctttcagaa ctcctgtggttcaacaatagcaagtaactgctcagttggtaattcaacaggaatcgtacgaagcttttgcgcgggaaaat cctcgtgctcaatcctgttgtcaagggcgacgttcggaacagattgtggcacacagaacattacctctagggtcaaattt tcatgcgtacttggtccaacatcggaagatgacgtcatcactgatggttggtggaacacgtggtctgattggggtgcctg tgacgtcacatgtgggggtgggacgaaagaaaggtcacgtttgtgcgacaatccagctccgaaaaataccgggaataatt gtactggactatccacgtcaactacaacatgtaacacaaatatatgtcaagaaacaaccaccaccactactacaggaaca tgctgtcaatgctctacgtcatcaaatgataatgttacggacgaagaaatacaagaaaagatagaggaaatccaggctaa actctacatcaacaaaagagaactgtcctcagcggtccgtaagaaaacttccgccaaagacgaccggccaacttcggttg ctgtgggatccgttgccatagtgattctgtctatagtgataatcggtgtcattggaatggacatcaagcgtttctatgac ggagccaagcgcttactgaacgtgacaataaagtatttcaaacgaggcagatataagaaatgcaaacaataa |
|
Protein
| Protein ID | pfu_aug2.0_586.1_20945.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_586.1_20945.t1 MSGQISPYDVIPYQLFIDDVIYGSFQNSCGSTIASNCSVGNSTGIVRSFCAGKSSCSILLSRATFGTDCGTQNITSRVKF SCVLGPTSEDDVITDGWWNTWSDWGACDVTCGGGTKERSRLCDNPAPKNTGNNCTGLSTSTTTCNTNICQETTTTTTTGT CCQCSTSSNDNVTDEEIQEKIEEIQAKLYINKRELSSAVRKKTSAKDDRPTSVAVGSVAIVILSIVIIGVIGMDIKRFYD GAKRLLNVTIKYFKRGRYKKCKQ |
|