Gene
| Gene Model ID | pfu_aug2.0_588.1_27561 |
|---|---|
| Locus | scaffold588.1 : 60366 ... 67921 : + |
| To GenomeBrowser | scaffold588.1:60366..67921 |
| Genes list of scaffold | scaffold588.1 |
| Synonym | pfu_aug1.0_4198.1_37830 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_588.1_27561.t1 | 1 | 1 | zf-C4 | 16 | 86 | 6.6e-29 | 99.9 | 1.5e-32 | 1.1e-28 | 99.2 |
| pfu_aug2.0_588.1_27561.t1 | 1 | 1 | Hormone_recep | 176 | 363 | 4.3e-28 | 97.8 | 1.1e-31 | 8.2e-28 | 96.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_588.1_27561.t1 | gi|676484842|ref|XP_009063473.1| | hypothetical protein LOTGIDRAFT_130367, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_588.1_27561.t1 | gi|259013325|ref|NP_001158362.1| | tailless [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_588.1_27561.t1 | gi|410916891|ref|XP_003971920.1| | 0.0 | |
| pfu_aug2.0_588.1_27561.t1 | gi|551502247|ref|XP_005802668.1| | PREDICTED: nuclear receptor subfamily 2 group E member 1-like [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_588.1_27561.t1 | gi|542232614|ref|XP_003449911.2| | PREDICTED: nuclear receptor subfamily 2 group E member 1-like isoform 2 [Oreochromis niloticus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_588.1_27561.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_588.1_27561.t1 atgaacaaagtgtcgggaacttctagtcggatactgactgatataccctgtaaggtgtgtcaggatcactcctccgggaa acactatggaatatacgcttgtgatggctgtgccggattcttcaaacgttctatacgaagaaatagacaatacatatgta aatcacgaggtcagacagcatgcccagtggacaaaactcacagaaaccaatgccgagcatgtagactcaagaaatgccta gagtcgggaatgaataaagatgctgttcaacacgagagaggaccaaggaattcaacaatcagaagacaggttgccatgta tctcaaggaaacacgtgattatggcgctcttgtggcgcagtctccatttcggccaccatatttgacggggtgttatggga tagaacacatggctgatgcttttgctatgagtccgttggagccgtcatcgcccgtcagtcccactggagttctatgtcaa cccacaccaaagtatcctcatgaaataatgcaggcgtattccaacaacccagaggctatatgtgaagtagcagccagact actttttatgagtgttaaatggaccaaaaatgtgccagctttccttggtttgcctttctcagatcaagttctgctgcttg aacagggatggagagaattatttctgcttggagcagcccagttccaaatgcccattgatcctgcaccactactgaccgca gcaggtgttacggcggaagactctccacctgaacgtgttgttaacatcatgactgaaatcagagctatgcaagaaattat atccaaattcaaatctcttcaagttgatccaacagaatttgcttgcctcaaaggcatagtattattcaaaacagtatttc caaattccgaccagtcacaagaaaccaaggcgctgagagactttcacacggtggcgggtctacaagaccaagctcagctg acccttagtaaatatatacaagcctcctaccccacccaacccttcaggtttggcaagcttctattatctattcccaccct aaagaccgtgtcaggatccaccattgctgatctcttcttcaggaaaaccatcggcagtattccaatcgagcggttactga ctgacatgttcaaatctagcgatttttga |
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Protein
| Protein ID | pfu_aug2.0_588.1_27561.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_588.1_27561.t1 MNKVSGTSSRILTDIPCKVCQDHSSGKHYGIYACDGCAGFFKRSIRRNRQYICKSRGQTACPVDKTHRNQCRACRLKKCL ESGMNKDAVQHERGPRNSTIRRQVAMYLKETRDYGALVAQSPFRPPYLTGCYGIEHMADAFAMSPLEPSSPVSPTGVLCQ PTPKYPHEIMQAYSNNPEAICEVAARLLFMSVKWTKNVPAFLGLPFSDQVLLLEQGWRELFLLGAAQFQMPIDPAPLLTA AGVTAEDSPPERVVNIMTEIRAMQEIISKFKSLQVDPTEFACLKGIVLFKTVFPNSDQSQETKALRDFHTVAGLQDQAQL TLSKYIQASYPTQPFRFGKLLLSIPTLKTVSGSTIADLFFRKTIGSIPIERLLTDMFKSSDF |
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