Gene
| Gene Model ID | pfu_aug2.0_589.1_30948 |
|---|---|
| Locus | scaffold589.1 : 126155 ... 135495 : - |
| To GenomeBrowser | scaffold589.1:126155..135495 |
| Genes list of scaffold | scaffold589.1 |
| Synonym | pfu_aug1.0_61311.1_34675 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_589.1_30948.t1 | 2 | 1 | fn3 | 35 | 116 | 1.3e-26 | 92.5 | 1.3e-15 | 4.8e-12 | 45.8 |
| pfu_aug2.0_589.1_30948.t1 | 2 | 2 | fn3 | 129 | 214 | 1.3e-26 | 92.5 | 3.3e-15 | 1.2e-11 | 44.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_589.1_30948.t1 | gi|585664629|ref|XP_006812052.1| | PREDICTED: protogenin-like [Saccoglossus kowalevskii] | 2.0e-32 |
| pfu_aug2.0_589.1_30948.t1 | gi|390355054|ref|XP_001199881.2| | PREDICTED: protogenin B [Strongylocentrotus purpuratus] | 7.0e-30 |
| pfu_aug2.0_589.1_30948.t1 | gi|736230018|ref|XP_010782245.1| | PREDICTED: immunoglobulin superfamily DCC subclass member 4 [Notothenia coriiceps] | 7.0e-27 |
| pfu_aug2.0_589.1_30948.t1 | gi|734594117|ref|XP_010730041.1| | PREDICTED: immunoglobulin superfamily DCC subclass member 4 [Larimichthys crocea] | 8.0e-27 |
Transcript
| Transcript ID | pfu_aug2.0_589.1_30948.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_589.1_30948.t1 atgttctataaagccattttgatggtggagggacaaggtcagacactagggattgtaaatcgcctgtttcaagccctgga gccgggcagtcccccggaacctccaccgccctcggagattgaaagtctggctattacaccccataccatgctcatcaagt ggaaccgcccccgtgtgaatatggagattacacgctacacggttagatatcacaatacggtggacttacagaagataaac tatgccataagtgatgagaggtcagtcagacttgagaacctgcagccattcaccgaatacttcatctctgtacgctctca ctcccagacaaattacggtccattcagtaacaccatcagagttcgcaccaaagaggatgtccctgacgccccacaagaca tacggctagtgccactacaagatggtatggtggagttgaactggaaaccgcctgccaagcaaaacggaattattatattc tacgtcatacagtacaacaaggaactagatgtccgtgacgaactctggcaaagtctacagaaaaacggaaccaagacaac ggcagtggttggagacctgacgggaacggtgtattactttaaagtgcgtgcatgtaccaaggctgggttaggtccctcct caggggtcgtccagatcagcctttcgtgcccagtcaactgtgacaaaaacaatattgatcactcgcctacacggccatct gagagccctagacctatgaaggaccagaggctcgggattattatcggctgtaccatagggatcagtagtatactcatctg tatcctggtcattattttaagacaaagacgatatgcggctatgtatgcccagtctaaccagcatattgtaaccacaacta ccaatggtaacatgtaccaatgtgccgcacaacgcatggcaaattacgccactaccaacaacgatgctaccactccgatg ctgagagaaagcatacactttgacagcaagggtgacggtccagatgttatagtgaaaaggaatggtcaagttatgtattt acatagtgggaaaaaagctaatggaagggtccagaccatagcagaatccagaccattgatgacaccacattcggaaaaca cagatgttcaagaagagtgtttgagtaaaacacagtcgactccttctgtaggagtcaccccagattccatacaagctgac tcatattgcagtgcacagacggacgcagcacaaacacatcatacagcacacaatatggacactgataaaaatgaagatgc tgattcagggtcttctgataagtcaaaagaagaatcaagagattcctcactgaaaaatttttcaagcgcggaaaatgttg aagagaatatgaaaattaatggtgaaggttacagtggaaatgacattttatcgaaaatgctcgaggccacatcatcaaac attgacactcctgtcgactctcccccctttccttcctctgaatcacaagcacagaaaacttctggtaatagctacgggtc aagttcacatgaatcttcactacctcaaaagtcaaggtcaaaggctcagaaaagatcttga |
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Protein
| Protein ID | pfu_aug2.0_589.1_30948.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_589.1_30948.t1 MFYKAILMVEGQGQTLGIVNRLFQALEPGSPPEPPPPSEIESLAITPHTMLIKWNRPRVNMEITRYTVRYHNTVDLQKIN YAISDERSVRLENLQPFTEYFISVRSHSQTNYGPFSNTIRVRTKEDVPDAPQDIRLVPLQDGMVELNWKPPAKQNGIIIF YVIQYNKELDVRDELWQSLQKNGTKTTAVVGDLTGTVYYFKVRACTKAGLGPSSGVVQISLSCPVNCDKNNIDHSPTRPS ESPRPMKDQRLGIIIGCTIGISSILICILVIILRQRRYAAMYAQSNQHIVTTTTNGNMYQCAAQRMANYATTNNDATTPM LRESIHFDSKGDGPDVIVKRNGQVMYLHSGKKANGRVQTIAESRPLMTPHSENTDVQEECLSKTQSTPSVGVTPDSIQAD SYCSAQTDAAQTHHTAHNMDTDKNEDADSGSSDKSKEESRDSSLKNFSSAENVEENMKINGEGYSGNDILSKMLEATSSN IDTPVDSPPFPSSESQAQKTSGNSYGSSSHESSLPQKSRSKAQKRS |
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