Gene
| Gene Model ID | pfu_aug2.0_589.1_30949 |
|---|---|
| Locus | scaffold589.1 : 142454 ... 166535 : - |
| To GenomeBrowser | scaffold589.1:142454..166535 |
| Genes list of scaffold | scaffold589.1 |
| Synonym | pfu_aug1.0_8193.1_67819 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_589.1_30949.t1 | 6 | 1 | Ig_2 | 23 | 118 | 3.5e-38 | 129.5 | 1.1e-10 | 5.4e-08 | 32.8 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 1 | Ig_3 | 27 | 105 | 1.9e-30 | 105.1 | 1.4e-07 | 6.8e-05 | 23.2 |
| pfu_aug2.0_589.1_30949.t1 | 3 | 1 | C2-set_2 | 30 | 65 | 9.6e-09 | 35.0 | 0.073 | 36.0 | 4.3 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 1 | ig | 41 | 81 | 3.7e-21 | 75.0 | 0.012 | 6.0 | 7.0 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 1 | V-set | 41 | 116 | 3.1e-20 | 72.1 | 0.044 | 22.0 | 5.0 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 1 | I-set | 53 | 112 | 1.4013e-45 | 153.9 | 3.0e-06 | 0.0015 | 18.3 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 2 | ig | 291 | 321 | 3.7e-21 | 75.0 | 0.0022 | 1.1 | 9.4 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 2 | Ig_3 | 302 | 321 | 1.9e-30 | 105.1 | 0.31 | 150.0 | 2.9 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 2 | I-set | 303 | 331 | 1.4013e-45 | 153.9 | 0.00052 | 0.26 | 11.1 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 2 | V-set | 303 | 327 | 3.1e-20 | 72.1 | 4.4e-05 | 0.022 | 14.6 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 2 | Ig_2 | 306 | 327 | 3.5e-38 | 129.5 | 0.047 | 23.0 | 5.1 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 3 | Ig_3 | 359 | 439 | 1.9e-30 | 105.1 | 1.2e-09 | 6.0e-07 | 29.8 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 3 | I-set | 360 | 453 | 1.4013e-45 | 153.9 | 1.4e-12 | 6.9e-10 | 38.6 |
| pfu_aug2.0_589.1_30949.t1 | 3 | 2 | C2-set_2 | 361 | 398 | 9.6e-09 | 35.0 | 0.00079 | 0.39 | 10.6 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 3 | Ig_2 | 362 | 454 | 3.5e-38 | 129.5 | 3.9e-08 | 1.9e-05 | 24.6 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 3 | V-set | 366 | 441 | 3.1e-20 | 72.1 | 2.3e-05 | 0.011 | 15.5 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 3 | ig | 375 | 438 | 3.7e-21 | 75.0 | 3.3e-05 | 0.016 | 15.2 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 4 | Ig_3 | 463 | 498 | 1.9e-30 | 105.1 | 0.011 | 5.3 | 7.6 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 4 | ig | 474 | 497 | 3.7e-21 | 75.0 | 0.086 | 42.0 | 4.3 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 4 | I-set | 476 | 512 | 1.4013e-45 | 153.9 | 0.0053 | 2.6 | 7.9 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 4 | V-set | 477 | 500 | 3.1e-20 | 72.1 | 0.036 | 18.0 | 5.2 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 4 | Ig_2 | 485 | 513 | 3.5e-38 | 129.5 | 0.13 | 66.0 | 3.7 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 5 | Ig_3 | 517 | 588 | 1.9e-30 | 105.1 | 4.4e-09 | 2.2e-06 | 28.0 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 5 | Ig_2 | 519 | 598 | 3.5e-38 | 129.5 | 1.8e-14 | 8.9e-12 | 44.9 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 5 | I-set | 530 | 601 | 1.4013e-45 | 153.9 | 5.7e-17 | 2.8e-14 | 52.7 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 5 | V-set | 530 | 589 | 3.1e-20 | 72.1 | 0.00011 | 0.054 | 13.3 |
| pfu_aug2.0_589.1_30949.t1 | 3 | 3 | C2-set_2 | 531 | 557 | 9.6e-09 | 35.0 | 2.3e-05 | 0.011 | 15.5 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 5 | ig | 532 | 586 | 3.7e-21 | 75.0 | 3.5e-08 | 1.7e-05 | 24.8 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 6 | Ig_2 | 609 | 648 | 3.5e-38 | 129.5 | 0.00051 | 0.25 | 11.4 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 6 | V-set | 618 | 639 | 3.1e-20 | 72.1 | 0.0055 | 2.7 | 7.9 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 6 | Ig_3 | 620 | 638 | 1.9e-30 | 105.1 | 0.041 | 20.0 | 5.7 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 6 | I-set | 624 | 651 | 1.4013e-45 | 153.9 | 8.0e-06 | 0.0039 | 16.9 |
| pfu_aug2.0_589.1_30949.t1 | 6 | 6 | ig | 626 | 636 | 3.7e-21 | 75.0 | 0.095 | 47.0 | 4.2 |
| pfu_aug2.0_589.1_30949.t1 | 2 | 1 | fn3 | 660 | 699 | 2.6e-08 | 33.8 | 0.00013 | 0.063 | 13.4 |
| pfu_aug2.0_589.1_30949.t1 | 2 | 2 | fn3 | 735 | 776 | 2.6e-08 | 33.8 | 4.2e-06 | 0.0021 | 18.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_589.1_30949.t1 | gi|641774167|ref|XP_008170681.1| | PREDICTED: immunoglobulin superfamily DCC subclass member 4 [Chrysemys picta bellii] | 1.0e-36 |
| pfu_aug2.0_589.1_30949.t1 | gi|119597899|gb|EAW77493.1| | protogenin homolog (Gallus gallus), isoform CRA_a [Homo sapiens] | 1.0e-32 |
| pfu_aug2.0_589.1_30949.t1 | gi|449471763|ref|XP_002198066.2| | 3.0e-31 | |
| pfu_aug2.0_589.1_30949.t1 | gi|685551109|ref|XP_009208680.1| | PREDICTED: immunoglobulin superfamily DCC subclass member 3 isoform X3 [Papio anubis] | 1.0e-29 |
| pfu_aug2.0_589.1_30949.t1 | gi|620972684|ref|XP_007663109.1| | PREDICTED: immunoglobulin superfamily DCC subclass member 4, partial [Ornithorhynchus anatinus] | 2.0e-29 |
Transcript
| Transcript ID | pfu_aug2.0_589.1_30949.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_589.1_30949.t1 atgaaaatagtggacagaattgaagagaccaattcgtcatgtgacatcgagttggatcttggcgtggtgatacagccagc ccctcccacggtcatcgcccagaagtcctttcccttcctactgaactgctccgcctactcgggacccgagtataggccca tcaactacacgtggtacaaggatggagcgcccatctccctctcacggagaatcaaactggtcaacaatggctccttgtac tttcacagcatcaaacgaagaaagaagcgaaaaaatctgaatgatcaaggattctatgaatgcttcttgaccaactcaca agggacggtcattgccagacaagtggaactaaaaatagcgagtcagatcgaaagagaactaggtcagatcaaaagagaac caggtcagatcgaaagagaactaggtcagatcaaaagagaaccaggtcagatcaaaagagaaccaggtcagatcaaaaga gaactaggtcagatcgaaagagaaccaggtcaaatcaaaagagaaccaggtcagatcgaaagagaactaggtcagatcaa aaaagaaccaggtcagatcaaaagagaaccaggtcagatcaaaagagaaccaggtcagatcaaaagagaaccaggtcaga tcaaaagagaactaggtcagattgaaagagaactaggtcagatcgaaagagaactaggtcagatcaaaagagaaccaggt cagatggaaagagaactaggtcagatcaaaagagaactaggtcagataaaaagagaaccaggtcagatcgaaagagaact agggacagggaaatcccactcgagtatcaaagatttgcgacgagggttactgagtcgtggatgttgcaaatctttgatac tagggtttattgagttggcgtcgggtatccttcagattgacaatgtccgtatgtccgacatcggcagctattactgctca gctcaccagagctttaccagtctcgtcaccaagggctccgtggctatcagctctcctatatggcgacacagcaaagaagc caaactgacggtcctacacgccagcggtcaccgagcaccgtccattgtagccgctacggaggtggtcaatgccacggtgg acagtacggtactcctggaatgttttgctgatggagaccctaaaccaaccataacatggcagaaaaaagcagaggaagat ggtaaaccagatagtccagttttagaggatgttcacaaaaggcgtatcggtaacggaaatctgaagttcatagaagtgtc ggggattgatgaagggatttacaagtgtactgcgtcagcaccgggatatagtgatgccgtggccctagttaacctcaatg tactgacagaggaagatggtaaaccagatagtccagttttagaggatgttcacaaaaggcgtatcggtaacggaaatctg aagttcatagaagtgtcggggattgatgaagggatttacaagtgtactgcgtcagcaccgggatatagtgatgccgtggc cctagttaacctcaatgtactgaaacctcctaagctgataaacacgcccattagttcatcttatccactgtcacagagag tcaggctcaaatgtgaggccaccggagaacctgaaccatcaataacctggtataaaaatggtcacctcgtcactcccaat ggacatataatgttgaatgccaatgaactgctgatagagagccgtaagagtgactcaggatactaccaatgtatggctaa aaatagagtagggacggtcatgaccacggcaagactgaaaattaccctgggagaagcattcctatatgaagaggggtcaa gattgaatgccaatgaactgctgatagagagccgtaagagtgactcaggatactaccaatgtatggctaaaaatagagta gggacggtcatgaccacggcaagactgaaaattaccctgggagagaatgctcctattgcacctcagtttgtaaaagccga gcctttgtctcctacggtaatgaacgtctcctggtcagcgtctgagtacagtgattgctgcccggtcataggatatacac tacattataataactcacagatactacttgtggagcgtggagcgtacagtaccactggtggagccagtctgggatctcct gtagtactagctagaactctggaaggagtgcctagtgccgcccctcgtgtgaatttgtccagcctcacctctacgaccat tgatgtaaaatggtggccactgaaagagcatcagagaaacggaagaattaccaagtataagattgtttacaaagaagcnc aagaattactggagaataaacctagccaagatagttgttcttctcagttaaagcatttcatgtaa |
|
Protein
| Protein ID | pfu_aug2.0_589.1_30949.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_589.1_30949.t1 MKIVDRIEETNSSCDIELDLGVVIQPAPPTVIAQKSFPFLLNCSAYSGPEYRPINYTWYKDGAPISLSRRIKLVNNGSLY FHSIKRRKKRKNLNDQGFYECFLTNSQGTVIARQVELKIASQIERELGQIKREPGQIERELGQIKREPGQIKREPGQIKR ELGQIEREPGQIKREPGQIERELGQIKKEPGQIKREPGQIKREPGQIKREPGQIKRELGQIERELGQIERELGQIKREPG QMERELGQIKRELGQIKREPGQIERELGTGKSHSSIKDLRRGLLSRGCCKSLILGFIELASGILQIDNVRMSDIGSYYCS AHQSFTSLVTKGSVAISSPIWRHSKEAKLTVLHASGHRAPSIVAATEVVNATVDSTVLLECFADGDPKPTITWQKKAEED GKPDSPVLEDVHKRRIGNGNLKFIEVSGIDEGIYKCTASAPGYSDAVALVNLNVLTEEDGKPDSPVLEDVHKRRIGNGNL KFIEVSGIDEGIYKCTASAPGYSDAVALVNLNVLKPPKLINTPISSSYPLSQRVRLKCEATGEPEPSITWYKNGHLVTPN GHIMLNANELLIESRKSDSGYYQCMAKNRVGTVMTTARLKITLGEAFLYEEGSRLNANELLIESRKSDSGYYQCMAKNRV GTVMTTARLKITLGENAPIAPQFVKAEPLSPTVMNVSWSASEYSDCCPVIGYTLHYNNSQILLVERGAYSTTGGASLGSP VVLARTLEGVPSAAPRVNLSSLTSTTIDVKWWPLKEHQRNGRITKYKIVYKEXQELLENKPSQDSCSSQLKHFM |
|