Gene
| Gene Model ID | pfu_aug2.0_589.1_30951 |
|---|---|
| Locus | scaffold589.1 : 207649 ... 228852 : + |
| To GenomeBrowser | scaffold589.1:207649..228852 |
| Genes list of scaffold | scaffold589.1 |
| Synonym | pfu_aug1.0_28218.1_55241 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_589.1_30951.t1 | 2 | 1 | Actin | 38 | 85 | 0.0 | 385.2 | 5.7e-12 | 8.4e-08 | 31.0 |
| pfu_aug2.0_589.1_30951.t1 | 2 | 2 | Actin | 90 | 370 | 0.0 | 385.2 | 0.0 | 0.0 | 353.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_589.1_30951.t1 | gi|260826410|ref|XP_002608158.1| | hypothetical protein BRAFLDRAFT_125875 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_589.1_30951.t1 | gi|676450362|ref|XP_009052354.1| | hypothetical protein LOTGIDRAFT_187900 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_589.1_30951.t1 | gi|675407864|ref|XP_008932378.1| | PREDICTED: alpha-centractin [Manacus vitellinus] | 0.0 |
| pfu_aug2.0_589.1_30951.t1 | gi|704249278|ref|XP_010147365.1| | PREDICTED: alpha-centractin [Eurypyga helias] | 0.0 |
| pfu_aug2.0_589.1_30951.t1 | gi|701291635|ref|XP_010021662.1| | PREDICTED: alpha-centractin [Nestor notabilis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_589.1_30951.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_589.1_30951.t1 atggcgatcagccgatcaagcgcaaattcacaaggggtagggactccctggaattgccaaaaattatcagggagaaggga tagaacccctggaatttgtccccaaatccttatttttcaggggtctggggtcatcaaggcaggtttcgccggagatcaag taccaaagtatcattttcccaactttgttggacgacctaaacatgtacgtgttatggcaggtgcattagaaggtgatgtc ttcctaggaccagatgctgaggaacacagagaccagttacaaacgttctcagaggaacatcctgttctactgacagaagc accgttaaatccaagacgaaacagggaaaaagccgcagaaatattttttgaaacctttaatgttccagctctatttatat ccatgcaagcagtgctaagtctatacgccactggtagaacaacaggcgtggtcctggactctggggatggagtaacacat gctgtacctatatatgaaggttttgccatgccacacagtataatgaggtcagatattgcagggcgtgacgtgactaggta cctaaggttactgctgaggaaagagggatataacttccatacctctgctgaattagaaattgtcaaaaccattaaagaga aagcctgttatttatctgacaatcctttaaaagaagaaagtttagaggcagagaaaggtcaatacacattacctgatggt agtacgatagaaattggaccagcaaggttcagggcaccagagttactgtttagaccagatttaataggggaggagtttga gggtatacatgaagttttatcgtactcaattaggaagtccgacatggatctgagaaggatgttatactctaatattgtat tatctggtggttcgacattattcagaagatttggtgatagattacttagtgaattgaaaaagttagctcccaaagacatt aaaattaggatatcagcaccacaagagagattatactcaacttggataggaggatcaattttagcgtcgctagatacctt taagaaaatgtgggtttcaaaaagagagtacagtgaagaggggatgaaagcaatacacaggaaaacattttaa |
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Protein
| Protein ID | pfu_aug2.0_589.1_30951.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_589.1_30951.t1 MAISRSSANSQGVGTPWNCQKLSGRRDRTPGICPQILIFQGSGVIKAGFAGDQVPKYHFPNFVGRPKHVRVMAGALEGDV FLGPDAEEHRDQLQTFSEEHPVLLTEAPLNPRRNREKAAEIFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTH AVPIYEGFAMPHSIMRSDIAGRDVTRYLRLLLRKEGYNFHTSAELEIVKTIKEKACYLSDNPLKEESLEAEKGQYTLPDG STIEIGPARFRAPELLFRPDLIGEEFEGIHEVLSYSIRKSDMDLRRMLYSNIVLSGGSTLFRRFGDRLLSELKKLAPKDI KIRISAPQERLYSTWIGGSILASLDTFKKMWVSKREYSEEGMKAIHRKTF |
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