Gene
| Gene Model ID | pfu_aug2.0_59.1_30088 |
|---|---|
| Locus | scaffold59.1 : 41235 ... 57165 : - |
| To GenomeBrowser | scaffold59.1:41235..57165 |
| Genes list of scaffold | scaffold59.1 |
| Synonym | pfu_aug1.0_44403.1_70515 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_59.1_30088.t1 | 7 | 1 | zf-C2H2 | 285 | 291 | 1.8e-06 | 27.8 | 5.2 | 7700.0 | -2.4 |
| pfu_aug2.0_59.1_30088.t1 | 6 | 1 | PHD | 480 | 502 | 6.3e-06 | 25.7 | 0.00021 | 0.31 | 10.7 |
| pfu_aug2.0_59.1_30088.t1 | 6 | 2 | PHD | 833 | 854 | 6.3e-06 | 25.7 | 0.0076 | 11.0 | 5.7 |
| pfu_aug2.0_59.1_30088.t1 | 7 | 2 | zf-C2H2 | 848 | 870 | 1.8e-06 | 27.8 | 2.1e-06 | 0.0031 | 17.7 |
| pfu_aug2.0_59.1_30088.t1 | 7 | 3 | zf-C2H2 | 876 | 901 | 1.8e-06 | 27.8 | 2.2e-06 | 0.0033 | 17.6 |
| pfu_aug2.0_59.1_30088.t1 | 6 | 3 | PHD | 900 | 911 | 6.3e-06 | 25.7 | 4.2 | 6200.0 | -3.1 |
| pfu_aug2.0_59.1_30088.t1 | 6 | 4 | PHD | 944 | 952 | 6.3e-06 | 25.7 | 2.1 | 3100.0 | -2.1 |
| pfu_aug2.0_59.1_30088.t1 | 7 | 4 | zf-C2H2 | 945 | 967 | 1.8e-06 | 27.8 | 0.01 | 15.0 | 6.1 |
| pfu_aug2.0_59.1_30088.t1 | 7 | 5 | zf-C2H2 | 979 | 998 | 1.8e-06 | 27.8 | 8.2e-05 | 0.12 | 12.7 |
| pfu_aug2.0_59.1_30088.t1 | 6 | 5 | PHD | 1050 | 1077 | 6.3e-06 | 25.7 | 0.00062 | 0.92 | 9.2 |
| pfu_aug2.0_59.1_30088.t1 | 6 | 6 | PHD | 1101 | 1151 | 6.3e-06 | 25.7 | 1.2e-06 | 0.0018 | 17.9 |
| pfu_aug2.0_59.1_30088.t1 | 7 | 6 | zf-C2H2 | 1145 | 1151 | 1.8e-06 | 27.8 | 2.3 | 3400.0 | -1.3 |
| pfu_aug2.0_59.1_30088.t1 | 7 | 7 | zf-C2H2 | 1227 | 1234 | 1.8e-06 | 27.8 | 5.9 | 8700.0 | -2.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_59.1_30088.t1 | gi|676430776|ref|XP_009046037.1| | hypothetical protein LOTGIDRAFT_224538 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_59.1_30088.t1 | gi|390365144|ref|XP_794791.3| | 0.0 | |
| pfu_aug2.0_59.1_30088.t1 | gi|564253622|ref|XP_006265811.1| | PREDICTED: PHD finger protein 19 [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_59.1_30088.t1 | gi|557262995|ref|XP_006017004.1| | PREDICTED: PHD finger protein 19 [Alligator sinensis] | 0.0 |
| pfu_aug2.0_59.1_30088.t1 | gi|632969425|ref|XP_007901080.1| | PREDICTED: PHD finger protein 19 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_59.1_30088.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_59.1_30088.t1 atgtttaactctcttcccagtaaaaacttcccttccagtagactatcagactcaagtcttaatttccatggtgacaagtt cagaagatttggggagaatgttgatcacatatatggagtattgaagagcagcagacgcacacagcaaccttttgattcaa tcagtaaaacatcacctaaaaaggtgaagggacgacacctcgatgcattcagacaagatgagattgacaacgagaataaa gtttttggtgactatccagttggtctattgaatcataatgaggtcattttcccatataatgccaaaacccaacatggaaa tatgagcagtaaacaaatgaatgataaaaggaaatttcttgggctacaggtagagaataggactaagtctgagatattgt tgaatactcatgattgtaaaaacaatgttggcaaaaagtctagtcttgtttcctctacggcctttgattcagacttcagt gctaaggattgtattccagacaggagacagaatagagtaaattgtctgtcagtacaaaatataaaaactgagatagaaga ggaggattcgtcagactctgattatgaagtgacatgtaacatgcagcgagtgcgtagcaggttaagcagctctcgacgga catctggctataacatggaggattacactgatagctcgtcctacacctctagtgaacaatctacacctgaaaggaaaaga aaaagacactcgtcagaattttccgatactgattatgtaccaaaaaagtccagacctgtacgtaaaaatgctcaaatcgt accagtgccttcccctgtaagaacacagaagctgctcctagaagtaaatgaaaaattacaacaacacatgaagaataagg aatcactaaagacaacagacgtcaaagaagagagagaagacatagaaatggagaccagagggggagtgaatatgaaattt gcacaggggagtgagtgtgaacctacagaggtgaagaaaaagaaggatggcagaggtcggccaagactcccagaaaaccg agacaaaatctacaaaactgaggtaaaaaagcagaggaaaccaggcagtggacggccaagaaagtatcccatcgacccag gcagtacacgtcctagaaagtttcccaccaacccaggcagtggaaataccaagaagtatcacggtggtccagagaaaatg tttacccaagctaaaaacaggtatacaggtgaaaataagccccacccggtcaggtcagattgccatgacaataaggtatt ggaaagtgtcatgggaataatgcctgtgtcgatatgtttgcaggttgatgaagcagagagaaaatgctatgtgaaatttg acgacaactctaaattctggatcatgttcaaagacctgcagaaaggtgctccagatgatgatgatgatgagctgtgtatg tgtagcgtgtgtaacggaggagagtcggaggttcctaacgagatcgtcctctgtgatagctgtggattagagtctatcct tgtagaaaactacaagaattttatgtttgcagagtctatccttgtagaaaactacaagaattttatgtttgcagagcctc aagttgagcctgaaaaacaggtaacgcctttaggaaacaatgtagtcaaagagataatgaagaaaacagaagagcaattt tctgaagtgaacatgtgtatgggtaaaaacttgatacggaaaagtccacgcagagtgagaaaatcgaaacagtctgagat ctatcagtactacggagatactactgacagtatgtcagggttggaggaaaatatatgggcatcaaatagctttaaaaatg attgtgctaaaacaagaaaaagcaatagaaaatgcagaaggaaagtggatgactcctatctgtttgatgatgaagttgag ggatttttaacgcaagatgaagcttggggaaaatatatggacaaaagccctttattcaagacagcagagagttttgatat aaaatggaacaaagctgatgaaaaagagggaatcaacattgtaaaggttgaggaaccaagcagtacagatgaagggccaa atcaagatgtccctcctacgaaatacacgtctggaaataacccatctggacactcgatatcaaatacagaaagtgatctc aaaataaaatttgtgaaactcaaggatagagataatgcttacacggtggttgacatgtcatgtaagccagcttgtttccc ttctccaaatgttgaggttaaacaagaggttgttgaggaggaggtgttagaaaaggaattaatccaaacagaggaggtgg gggtgaaggaagaagacaaatcagctgaggaagagaagttggaagacaaagaactagagaaatcagtcaaggaagagact gtggagctaaatgaacaagagaaatcagagcatgtgacagaggatgattctgacagtagctgtgttcgggtaattgacga ttcatctcgcagaaaatcttgtcagggggtaaaacggagctcagggcgtaagtcaggtggatatcagtgtcctcagtgta atcaggtattcagtgagttgtacagacttaagcgtcatgtattgtctcatactgcaatacggccgtatagatgtttgtat tttggatgttcgtggtcgtttaagagaaaggagcacttggatagacatatgatcaaagttcacaaagactgtacaggttc tactgatagcataataaccaaggacaaaagagacttggacgattttgtagagacactttgtgtggacagcagaaaaacgg tctcacggcagggaagtttggggcagggtttcttctcctgtagcctctgtcaagaatcttttgatactctgacaaaatac cgaacgcacaattatgagcacttgaaaaggaactttgttttaggattacatctgtgcaccatatgttctatgggattcaa agacaaaagaaatcttatacggcatcgtaggagaggatcgtgtgaaccatttcaccctagtcaagatagtgacacatcag attgtgaaccagattttacgaaaaatataagtcgtcacttcaatcacaattcaaatgctactcagcctgacatagctgaa gtaagagaagatgaaattttagagtgtccatatcatcagcagtgtcatacacccaatataggagaggatgtgctcaaacc tgacgtagaatggaaatgtcgactctgtgtgtttgccgctgccgttaagatagacagactaacatgggacgcccaacaca gagtgaatgtggagaggacgtattgttactgtggagggccaggattatggagtaagaaaatgttacaatgctgtagatgt agacaatggttccatgaagcatgtatccagtgcttggaccatcccctgatgaccggagataagttttacgtctttgtgtg ttctcactgtaatgctggaccagagtacatcaaaagattagaaatgacatggtctgatgtgattcacctagccttgtact gtatgtctagtcagtgtggccttcctaagaaactgtacgaggaagaggaaatcatagaattcatcaacagtcactgggaa caactacaactcaaacagttttctgaggtgacatcagaagatagaaaagcaaagattttggaagagttgtcttctccttg taatcgaaggttttctaacggccaagagctaggtaaaccggccactctgtggtcactacgtcagcggttacccccaccag ctcccactattatgctaccgtttgaaggtaaagttacagaggcagtgatgcagactctacaactgataggaaaaggtcgt gttaaatacctcgtaccaaaagatagattgtactgcaaaattcgcgcattactcgggtgtacgccaacggaagtaaaagc tgatttggacaaagtatatggggaccaagctctttcatatcctacagttttgaggtggataaagcgatttaaggcaggca gggaatctctagaagatgacccaagatcaggtaggcctttgtcggcctatagtgaaaaagacataattgcagtgaaaaat gcaattgaggaagatgctcgttacacggtggaagaaatatcggatgctactaacattaattcgtcagcagtattttcaat tttaaaggaacgtttgaacctcaggaaggtctgcgcccgatgggtcccacatttacttacggaggcccaaaagcgtctcc gcgtggaatcagccctggaattgttagaattgtatgaagactgtgatcagtggcgactaaacgaaatagtaactggggac gaaacgtggatttactttatcgagccagaaacaaagcagcataataaagtttggatcggaggagatggtccgagtcctca aatcgcgnaaagtctgcgcccgatgggtcccacatttacttacggaggcccaaaagcgtctccgcgtggaatcagccctg gaattgttagaattgtatga |
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Protein
| Protein ID | pfu_aug2.0_59.1_30088.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_59.1_30088.t1 MFNSLPSKNFPSSRLSDSSLNFHGDKFRRFGENVDHIYGVLKSSRRTQQPFDSISKTSPKKVKGRHLDAFRQDEIDNENK VFGDYPVGLLNHNEVIFPYNAKTQHGNMSSKQMNDKRKFLGLQVENRTKSEILLNTHDCKNNVGKKSSLVSSTAFDSDFS AKDCIPDRRQNRVNCLSVQNIKTEIEEEDSSDSDYEVTCNMQRVRSRLSSSRRTSGYNMEDYTDSSSYTSSEQSTPERKR KRHSSEFSDTDYVPKKSRPVRKNAQIVPVPSPVRTQKLLLEVNEKLQQHMKNKESLKTTDVKEEREDIEMETRGGVNMKF AQGSECEPTEVKKKKDGRGRPRLPENRDKIYKTEVKKQRKPGSGRPRKYPIDPGSTRPRKFPTNPGSGNTKKYHGGPEKM FTQAKNRYTGENKPHPVRSDCHDNKVLESVMGIMPVSICLQVDEAERKCYVKFDDNSKFWIMFKDLQKGAPDDDDDELCM CSVCNGGESEVPNEIVLCDSCGLESILVENYKNFMFAESILVENYKNFMFAEPQVEPEKQVTPLGNNVVKEIMKKTEEQF SEVNMCMGKNLIRKSPRRVRKSKQSEIYQYYGDTTDSMSGLEENIWASNSFKNDCAKTRKSNRKCRRKVDDSYLFDDEVE GFLTQDEAWGKYMDKSPLFKTAESFDIKWNKADEKEGINIVKVEEPSSTDEGPNQDVPPTKYTSGNNPSGHSISNTESDL KIKFVKLKDRDNAYTVVDMSCKPACFPSPNVEVKQEVVEEEVLEKELIQTEEVGVKEEDKSAEEEKLEDKELEKSVKEET VELNEQEKSEHVTEDDSDSSCVRVIDDSSRRKSCQGVKRSSGRKSGGYQCPQCNQVFSELYRLKRHVLSHTAIRPYRCLY FGCSWSFKRKEHLDRHMIKVHKDCTGSTDSIITKDKRDLDDFVETLCVDSRKTVSRQGSLGQGFFSCSLCQESFDTLTKY RTHNYEHLKRNFVLGLHLCTICSMGFKDKRNLIRHRRRGSCEPFHPSQDSDTSDCEPDFTKNISRHFNHNSNATQPDIAE VREDEILECPYHQQCHTPNIGEDVLKPDVEWKCRLCVFAAAVKIDRLTWDAQHRVNVERTYCYCGGPGLWSKKMLQCCRC RQWFHEACIQCLDHPLMTGDKFYVFVCSHCNAGPEYIKRLEMTWSDVIHLALYCMSSQCGLPKKLYEEEEIIEFINSHWE QLQLKQFSEVTSEDRKAKILEELSSPCNRRFSNGQELGKPATLWSLRQRLPPPAPTIMLPFEGKVTEAVMQTLQLIGKGR VKYLVPKDRLYCKIRALLGCTPTEVKADLDKVYGDQALSYPTVLRWIKRFKAGRESLEDDPRSGRPLSAYSEKDIIAVKN AIEEDARYTVEEISDATNINSSAVFSILKERLNLRKVCARWVPHLLTEAQKRLRVESALELLELYEDCDQWRLNEIVTGD ETWIYFIEPETKQHNKVWIGGDGPSPQIAXSLRPMGPTFTYGGPKASPRGISPGIVRIV |
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