Gene
| Gene Model ID | pfu_aug2.0_59.1_30092 |
|---|---|
| Locus | scaffold59.1 : 107956 ... 114520 : + |
| To GenomeBrowser | scaffold59.1:107956..114520 |
| Genes list of scaffold | scaffold59.1 |
| Synonym | pfu_aug1.0_27210.1_55197 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_59.1_30092.t1 | 2 | 1 | RVT_1 | 477 | 650 | 2.0e-11 | 43.7 | 1.3e-13 | 9.8e-10 | 38.1 |
| pfu_aug2.0_59.1_30092.t1 | 2 | 2 | RVT_1 | 942 | 979 | 2.0e-11 | 43.7 | 0.012 | 86.0 | 2.3 |
Transcript
| Transcript ID | pfu_aug2.0_59.1_30092.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_59.1_30092.t1 atgctgagaagctcggcgagacgatcgacatcgcagtacgcccggggccgcagtcgtggtaccccgaaggccccagccgc agcaatggaggcccgctcagcgacaacgcgacgtacagccactgtggtcactacatgcccccctgagactgatgtcaatc ccacaccgcccaaatcacgagccacgttgcctgcgagctctcctgaggaggcgcccacaaatattcaggataatgatatc attgatgctatgcttttgtctccacccccgcagagtactattactgcggctcatgatgccttgcctgacttggctgatgc tactagcaaaggtacatgtacgctaaatgatggtgcatcaaattatgcattcccaattcaaccaaatgctttagtaagcg tcactgacgcccttgggactcatgttgcttcctcacttaaatcttctattttcaacaatgaatttgttcatttgcataaa ctcataccaaacaaagctaacgaggaaccccagcaacagcttacgctagtaaatggggagctcgtaataaaacctaaaca caaagaagttcgcattaattcactagattcttggacaaatgcttttctcatatacatgagtatctacctttcaaaatttc ctgattatgcccaatccttgcttaaatacttacataccgtgcgcacagccgcacaacgctctactaatttaagttggctc gattacgatgttcaatttagactaaagcggtctcgcaatcatactattcagtggtgctctgtagatgctgagctctggct cctttatgttaattcaagctccacatccacaacaaataccacaccagctaaagccggcaaatgttttgacttcaattata agggtctgtgctctaagcccatttgtaattatcaacacttgtgtatgaaatgttcgaagtcccaccccatgatgaactgc agggttcaaacttctaaccgccaagatccaaaaacttttcgccaagaatacaaacacacccccaccacccagtacgccag ccatcagtacgctggccaccaatacgccggtcaccagtacgccgcccccaagctgcaagtaaaggctacggcaggggtca atcaaacacgaatacaagagctctgggatatggctcctacccctattaatacttcagtactcgaaactatgttacaatat taccctgacaaacaaatagctcaagaattgattttaggtttcaagaatggtttcagtattcattacacaggcatacggtc ccccattatagcaaaaaatatgaaatcggcaacagctcacgctgaacaattggctgtcaaaatttaccaggaagtcgagt taggaagaattagtggcccattcttggaaaaacccatatctaaccttcgctatagccccatttgccttataccaaaaaaa caagggggttggcgtatgatttgtaacctctccgtaccttttagaaagagcgtcaacgacgatattgacccaaagctttg ctcagttcaatattcatcttttgatagcgccatagaaatgtttcaaaaattggggacaagcgcgttgctcggcaaagaag atatcgcaagcgcattcaggcttctcccgatccgtccaggggatttctgtctgttaggtttccagtttcaaggaaatttt tttatcgacaaatgcttgccttttggctgttctgtagcttgtgcaacgtttgaaaaattctcgaccgaattgcactggtt aatagaacagcacagttccctggactctatagtacactacattgatgatttcctattcgcaggcccagccaagtccgaaa attgtaaagaactcatggccacctttgactttatctgtgaccggttagaggttcctatatctcaagataaaaccgaaggg ccttccactaagctaacaatcctgggccttggcattgatacggatactcaaacgatctacgtcccggccgacaagggtca aaacttgcaaacangaaatctgcaacagctcacgctgaacaattggctgtcaaaatttaccaggaagtcgatgggatgcg ttcagacaagtggcccccaatgcggacttttatccgtgccagataccatcccaattttggcccagtttaagcctgttgta gagaatctcgtcagaagctctttgtcagcgaaatcgcaagcgacttacagtaagggcctcgattcttttgtacaatttag aaaacaattctcctttcctaattattggccaccctctgtgaaccaaatagtcaattacctggccttcatggccagtaagg ggctctcttactccactgttaaatgctaccttgccggaataagcttcaatctgaagctgaacaattttaccgacccttgt caattctttatcgttcaaaagatgctgcttggccttaaaagaactaaaaatgttaaagatgttcgcagccctatcaccct cccactcctaaaccaattattaaatgtttgtcacaactactatgaatatatcctgtttgctgcagcatactgcctggctt tctttgctctattacgggttggcgaaatcacactcacgaatgctcaaaccagttatgatccactacgactcgaaaatatt gtgttcgaaccctctcacctcattatcaacattctcagatccaaaactgaccaggcaggcaagggtacgcgtctccaagt caatcgtaatagtgataaccagcccctattttcctgtttgcatgcatacattaaaattagaccacaatgcgcgggccagt ttttttgcaatattgatagcacccctctcacctattctcaatttcaaaaagtactaaagaaagccctagcattcatcaaa atagatatgtcaacttttaaatcccactcctttcgtataggagccgctacccaacttttcttgaacggtgccactgaagc cgaaataaaatcaaaaggtcgctggcgctcaaactcctacaaaacgtacattcgccctgaatctattatcatgtaa |
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Protein
| Protein ID | pfu_aug2.0_59.1_30092.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_59.1_30092.t1 MLRSSARRSTSQYARGRSRGTPKAPAAAMEARSATTRRTATVVTTCPPETDVNPTPPKSRATLPASSPEEAPTNIQDNDI IDAMLLSPPPQSTITAAHDALPDLADATSKGTCTLNDGASNYAFPIQPNALVSVTDALGTHVASSLKSSIFNNEFVHLHK LIPNKANEEPQQQLTLVNGELVIKPKHKEVRINSLDSWTNAFLIYMSIYLSKFPDYAQSLLKYLHTVRTAAQRSTNLSWL DYDVQFRLKRSRNHTIQWCSVDAELWLLYVNSSSTSTTNTTPAKAGKCFDFNYKGLCSKPICNYQHLCMKCSKSHPMMNC RVQTSNRQDPKTFRQEYKHTPTTQYASHQYAGHQYAGHQYAAPKLQVKATAGVNQTRIQELWDMAPTPINTSVLETMLQY YPDKQIAQELILGFKNGFSIHYTGIRSPIIAKNMKSATAHAEQLAVKIYQEVELGRISGPFLEKPISNLRYSPICLIPKK QGGWRMICNLSVPFRKSVNDDIDPKLCSVQYSSFDSAIEMFQKLGTSALLGKEDIASAFRLLPIRPGDFCLLGFQFQGNF FIDKCLPFGCSVACATFEKFSTELHWLIEQHSSLDSIVHYIDDFLFAGPAKSENCKELMATFDFICDRLEVPISQDKTEG PSTKLTILGLGIDTDTQTIYVPADKGQNLQTXNLQQLTLNNWLSKFTRKSMGCVQTSGPQCGLLSVPDTIPILAQFKPVV ENLVRSSLSAKSQATYSKGLDSFVQFRKQFSFPNYWPPSVNQIVNYLAFMASKGLSYSTVKCYLAGISFNLKLNNFTDPC QFFIVQKMLLGLKRTKNVKDVRSPITLPLLNQLLNVCHNYYEYILFAAAYCLAFFALLRVGEITLTNAQTSYDPLRLENI VFEPSHLIINILRSKTDQAGKGTRLQVNRNSDNQPLFSCLHAYIKIRPQCAGQFFCNIDSTPLTYSQFQKVLKKALAFIK IDMSTFKSHSFRIGAATQLFLNGATEAEIKSKGRWRSNSYKTYIRPESIIM |
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