Gene
| Gene Model ID | pfu_aug2.0_59.1_30108 |
|---|---|
| Locus | scaffold59.1 : 332543 ... 380537 : + |
| To GenomeBrowser | scaffold59.1:332543..380537 |
| Genes list of scaffold | scaffold59.1 |
| Synonym | pfu_aug1.0_3711.1_08702 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_59.1_30108.t1 | 1 | 1 | PALP | 20 | 274 | 0.0 | 158.7 | 0.0 | 0.0 | 158.1 |
| pfu_aug2.0_59.1_30108.t1 | 3 | 1 | CBS | 349 | 380 | 9.1e-14 | 50.9 | 1.8e-06 | 0.0091 | 15.7 |
| pfu_aug2.0_59.1_30108.t1 | 3 | 2 | CBS | 394 | 438 | 9.1e-14 | 50.9 | 4.7e-10 | 2.3e-06 | 27.2 |
| pfu_aug2.0_59.1_30108.t1 | 3 | 3 | CBS | 451 | 486 | 9.1e-14 | 50.9 | 0.008 | 40.0 | 4.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_59.1_30108.t1 | gi|676476666|ref|XP_009060864.1| | hypothetical protein LOTGIDRAFT_219173 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_59.1_30108.t1 | gi|260831510|ref|XP_002610702.1| | hypothetical protein BRAFLDRAFT_117945 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_59.1_30108.t1 | gi|690453628|ref|XP_009326275.1| | PREDICTED: cystathionine beta-synthase-like [Pygoscelis adeliae] | 0.0 |
| pfu_aug2.0_59.1_30108.t1 | gi|729763121|ref|XP_010578568.1| | PREDICTED: cystathionine beta-synthase-like isoform X6 [Haliaeetus leucocephalus] | 0.0 |
| pfu_aug2.0_59.1_30108.t1 | gi|729763115|ref|XP_010578565.1| | PREDICTED: cystathionine beta-synthase-like isoform X4 [Haliaeetus leucocephalus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_59.1_30108.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_59.1_30108.t1 atgaaattccttctacgtgggggcttggtctttccgccgaagagtcgagagaaagtggcaaagtgcgagttctttaacgc tggaggcagtgtgaaggaccgtattggacttaggatgatcgaggacgcagagaaacaaggatatcttaaagcaggagacg ttcttatagaacctacgtcaggaaacacgggtattggtatagccctaggagcagccgtcaaaggttacaggtgtattata gtcatgccggaaaaaatgagcatggaaaaggtagatgtactgagggctctaggagcagagattgtccgtacacctacggc cgcggcatttgactcgcccgagtcacatatcggatatagaaatgccagcaacccacttgcacattttgacggcactgccg aagaaatcttacgagcttgtaatgacaaagttgacatggtggtgttaggtgccggtacagggggaactctcaccggagtg gcacgaaaaatcaagttaagatgtccgaattgtaaggtaattggagttgatccagaggggtcagttatagccgagccgga aaccctgaacaaatcagacacgtcattttatgaagtagaaggtgttggttatgactttgtacctacagtttgtgatagac agttagtggacaaatggtacaaatccaaggacaaagagtcgtttgtaatggctcgtcgtttgatcagagatgaggggctg ttatgtggaggaagctgcggttccgcgatgtactgtgctctacaggcgatcagggactttggtctgaaggaaggacagag atgtgtggtcctactcccagactcagtcagaaattacattgctctacaggtgatcagggactttggtctgaaggaaggac agagatgtgtggttctactcccagactcggtcagaaattacatgacaaagtacctgagtgatgactggatgagccagaga gatttcctcgtgtcagaaaagaagatagagcccacggaaggatggtggtggaacctcaacgtcagtgcgttacagctgag agccccgttaacagtgaccccgcaggtaacgatacaggaaacacttgatgtacttaacaaagaaggattcgatcaagtac ctgtcgtcaatgaggcagggtggtggaacctcaatgtcagtgcattacagctgagagccccgttaacggtgactccgcag gtaacgatacaggaaacacttgatgtgttaaacaaagaaggattcgatcaagtacctgtcgtcaatgaggcaggagatat aatgggtatggttaccgtcggcaacatgatgtcacaagttgtgaagtcaaaggtcaagtcctcagacccggtgtcaaagg tcatgtataaacaattcaagaaggtccatatggatacgagcctaggtcagatatctcgtatgttggacacagaccacttc gtccttgtggtacatgaccaacgccaatgcacagctgcccctgataacagtggaagagaatttatcataggtttcatgga caacttaatttaccctaaaagtcactcctggtacgcatcaggaaaactccttggcaatcaactgtttattacaacttcaa gcaaatctaatgtcgtggtccaagtcacggcaccaagatgcaaccatttccttaacgagacattcagtctaagagctgga gaagtaaaacaattaacgatcagcagagattttcgtttaagtggtacagaaatgactgagaaaggcattcttataaaagc aacagacgacattgttatctatggaatcaacaaagagacatattcaaacgacggatttcttggtttgcccactgatgtac ttggtaaagagtactttgcggcatcgtatggcccagctacaatatattgcttgatcctaattatcggtatacatgacgac actgaagtcaacataaagctatctggaaatcaggacctcatatcagtagacaaatgggggaaacgatacatcgcagttcc tattccagagagagctgctggtgacacgtaccgatttattgctagtgaaagtgatacaaacattaagatttggggtcaaa ggggaagacatttggaggtcaacgaacaggccaaattatccgttcctggtagctggaccgagaaatcatatagtgcagat atctatttgtacatcgaggcaagtaaacccatacttgttgttcagtacgtgttaagccagttgaacaccgggtacagtac agatattggtgatccttccatgatcctgttaccgcctgttgaacaatacgatgctgattacacattcacaactcccaagt actctctcggatcatactataattatttcctattcgtcgtgaaagagggggaagaaaatggactaagagtgaatggaaaa ccggtaccaaccacaaccacctacactaaagtaccaaatactaattatgtcggcggattcataaagatccctgagggtac atatcaatgtaaacataccaatccaacttctgtgtttggtgccgttctctttggtcgccaatatatggaatcgtacggct tccctgcaggattaaggctctcgcctatcaacaagccatgtatacagacagcaatgataccaggagatggctacgataac gactgtgacggacttatagacgaggaaatctgctatgatcaatggcaaaatcaggacgaggatacggatggattgacgga tgaagattgtgtgaaatatccgccagatgtgtccaccaagctcaacaacaacgttcacatggaacagattacaactgaca ccacagatgataaaccgacatcttcacgcatctataacacggtggcagtttcgcacaatggcattgacgatacaacaata caggattcgacgaaaactcagaattctaactccaggcacaatcaaaaggagtcgcataaagttacaacgggaaatgccga aaatttgtatcgatatgaagaactaaatgacgatgaattgcaagaaatctttgttttcccggattggataagacggctgg aggtcgggattctctcggtgactattatcataatggcgggtatgattacatgtgcgtgtagacgtctctgtttgactggt gggagaagaaataatgaggaagaggaagaaaaatatttcgtttggagagaaaagaagagacccctgccacgcaaaaaaac atag |
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Protein
| Protein ID | pfu_aug2.0_59.1_30108.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_59.1_30108.t1 MKFLLRGGLVFPPKSREKVAKCEFFNAGGSVKDRIGLRMIEDAEKQGYLKAGDVLIEPTSGNTGIGIALGAAVKGYRCII VMPEKMSMEKVDVLRALGAEIVRTPTAAAFDSPESHIGYRNASNPLAHFDGTAEEILRACNDKVDMVVLGAGTGGTLTGV ARKIKLRCPNCKVIGVDPEGSVIAEPETLNKSDTSFYEVEGVGYDFVPTVCDRQLVDKWYKSKDKESFVMARRLIRDEGL LCGGSCGSAMYCALQAIRDFGLKEGQRCVVLLPDSVRNYIALQVIRDFGLKEGQRCVVLLPDSVRNYMTKYLSDDWMSQR DFLVSEKKIEPTEGWWWNLNVSALQLRAPLTVTPQVTIQETLDVLNKEGFDQVPVVNEAGWWNLNVSALQLRAPLTVTPQ VTIQETLDVLNKEGFDQVPVVNEAGDIMGMVTVGNMMSQVVKSKVKSSDPVSKVMYKQFKKVHMDTSLGQISRMLDTDHF VLVVHDQRQCTAAPDNSGREFIIGFMDNLIYPKSHSWYASGKLLGNQLFITTSSKSNVVVQVTAPRCNHFLNETFSLRAG EVKQLTISRDFRLSGTEMTEKGILIKATDDIVIYGINKETYSNDGFLGLPTDVLGKEYFAASYGPATIYCLILIIGIHDD TEVNIKLSGNQDLISVDKWGKRYIAVPIPERAAGDTYRFIASESDTNIKIWGQRGRHLEVNEQAKLSVPGSWTEKSYSAD IYLYIEASKPILVVQYVLSQLNTGYSTDIGDPSMILLPPVEQYDADYTFTTPKYSLGSYYNYFLFVVKEGEENGLRVNGK PVPTTTTYTKVPNTNYVGGFIKIPEGTYQCKHTNPTSVFGAVLFGRQYMESYGFPAGLRLSPINKPCIQTAMIPGDGYDN DCDGLIDEEICYDQWQNQDEDTDGLTDEDCVKYPPDVSTKLNNNVHMEQITTDTTDDKPTSSRIYNTVAVSHNGIDDTTI QDSTKTQNSNSRHNQKESHKVTTGNAENLYRYEELNDDELQEIFVFPDWIRRLEVGILSVTIIIMAGMITCACRRLCLTG GRRNNEEEEEKYFVWREKKRPLPRKKT |
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