Gene
| Gene Model ID | pfu_aug2.0_5914.1_16155 |
|---|---|
| Locus | scaffold5914.1 : 15408 ... 23302 : - |
| To GenomeBrowser | scaffold5914.1:15408..23302 |
| Genes list of scaffold | scaffold5914.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5914.1_16155.t1 | 1 | 1 | RNase_PH | 13 | 74 | 7.7e-09 | 35.9 | 1.8e-12 | 1.3e-08 | 35.1 |
| pfu_aug2.0_5914.1_16155.t1 | 3 | 1 | RNase_PH_C | 71 | 82 | 9.5e-11 | 41.4 | 1.0 | 7700.0 | -3.1 |
| pfu_aug2.0_5914.1_16155.t1 | 3 | 2 | RNase_PH_C | 98 | 159 | 9.5e-11 | 41.4 | 7.3e-14 | 5.4e-10 | 39.0 |
| pfu_aug2.0_5914.1_16155.t1 | 3 | 3 | RNase_PH_C | 148 | 185 | 9.5e-11 | 41.4 | 0.0015 | 11.0 | 5.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5914.1_16155.t1 | gi|676456286|ref|XP_009054277.1| | hypothetical protein LOTGIDRAFT_188948 [Lottia gigantea] | 1.0e-38 |
| pfu_aug2.0_5914.1_16155.t1 | gi|524911937|ref|XP_005110826.1| | PREDICTED: exosome complex exonuclease RRP42-like [Aplysia californica] | 3.0e-36 |
| pfu_aug2.0_5914.1_16155.t1 | gi|260834769|ref|XP_002612382.1| | hypothetical protein BRAFLDRAFT_280121 [Branchiostoma floridae] | 8.0e-32 |
| pfu_aug2.0_5914.1_16155.t1 | gi|699652209|ref|XP_009896656.1| | PREDICTED: exosome complex component RRP42 [Picoides pubescens] | 4.0e-28 |
| pfu_aug2.0_5914.1_16155.t1 | gi|602636410|ref|XP_007425060.1| | PREDICTED: exosome complex component RRP42 [Python bivittatus] | 6.0e-28 |
Transcript
| Transcript ID | pfu_aug2.0_5914.1_16155.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5914.1_16155.t1 gacaattgcagagaagatggacgaggatgtgaagattacagacatctagaaatagaaactaacgtactatcaaacactag cggatcatcgagggttaggcactctaacacagacctactggtaggagttaaagcagagttaggggacccagcagctgaaa aaccggacagaggcaaactagaattctttgtagactgaatacccactgtaacagtgagtcaagatgagggtttgatggaa ttagaaatttctgatgatccgttcgacgtacaaagacttgatgttcatagcgccccatgtatcattactgtaaacaaggt aggacattcccatgtggtggatgctagtcataaagaagaggaatgttctctggccaggcttatgatgggtgtgaccagta aagggacaatcacagcccttaggaaggagggatcagggagtctggacccgtccagtctggaagatatgatggaggtatgt atgtataagttaatgatggatgtgaccagtaaagggacaataacagccctaaggaaggagggatcaggaagtctgaaccc atcgagatatgatggaggtatgtatgtatag |
|
Protein
| Protein ID | pfu_aug2.0_5914.1_16155.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5914.1_16155.t1 DNCREDGRGCEDYRHLEIETNVLSNTSGSSRVRHSNTDLLVGVKAELGDPAAEKPDRGKLEFFVDXIPTVTVSQDEGLME LEISDDPFDVQRLDVHSAPCIITVNKVGHSHVVDASHKEEECSLARLMMGVTSKGTITALRKEGSGSLDPSSLEDMMEVC MYKLMMDVTSKGTITALRKEGSGSLNPSRYDGGMYV |
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