Gene
| Gene Model ID | pfu_aug2.0_593.1_10966 |
|---|---|
| Locus | scaffold593.1 : 75906 ... 78510 : + |
| To GenomeBrowser | scaffold593.1:75906..78510 |
| Genes list of scaffold | scaffold593.1 |
| Synonym | pfu_aug1.0_1276.1_36910 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_593.1_10966.t1 | 1 | 1 | zf-LITAF-like | 152 | 224 | 3.4e-23 | 81.2 | 3.4e-26 | 5.5e-23 | 80.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_593.1_10966.t1 | gi|706146853|ref|XP_010205349.1| | PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha factor [Colius striatus] | 5.0e-17 |
| pfu_aug2.0_593.1_10966.t1 | gi|699672079|ref|XP_009884894.1| | PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha factor [Charadrius vociferus] | 7.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_593.1_10966.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_593.1_10966.t1 atgtcaaatgaacctccgagttaccaagaatgtgtacaggggtccttagctccttctatgcctgtcggagccccggagaa ggtacctcaacacggggcaacgtgggacggatctcctcagtatcagtctccgccaccacctcctattggaactaacatga cggccgatccttatgattaccctgttcaaatacatgtagatgaaaaatcaggagcgactccacacattttcacgcagttt cctgaaggtccctcttcaccatatccacctgaaccaacgcatacatacccagttcagatatctggatatgctgcgtcaac atcagtgaactacggactgacgcctggatttacacctgtatccctatctcacggaaataacgacgttaccatgcctggcg attcaacaagtgtcattgtatcaacccaaccacaggccgtaccgattgtattccaagaatttcccgtcagaatgcaatgt ccttactgtaacaaagaaatcacaacagaaacaaaaaatgtggccggaagtgcgtcatggctctggtgttttattctggc tttcttcgggtgtttcctcggatgttgcctgattccatttttgataccgtcttgcttggatgtggagcacacatgcccgg aatgtggggaatcaataggcacgtgctacaggtcgtcacctgttgtcactggtggatcacgtggtcactttagacataca cacagacacaggcacatgcattatggacatgttcatcgcaacatgcacatgcagcatcgtcatcgtcaccgtcagcgtcg tcgtcgtcgtcgccgccgataa |
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Protein
| Protein ID | pfu_aug2.0_593.1_10966.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_593.1_10966.t1 MSNEPPSYQECVQGSLAPSMPVGAPEKVPQHGATWDGSPQYQSPPPPPIGTNMTADPYDYPVQIHVDEKSGATPHIFTQF PEGPSSPYPPEPTHTYPVQISGYAASTSVNYGLTPGFTPVSLSHGNNDVTMPGDSTSVIVSTQPQAVPIVFQEFPVRMQC PYCNKEITTETKNVAGSASWLWCFILAFFGCFLGCCLIPFLIPSCLDVEHTCPECGESIGTCYRSSPVVTGGSRGHFRHT HRHRHMHYGHVHRNMHMQHRHRHRQRRRRRRRR |
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