Gene
| Gene Model ID | pfu_aug2.0_593.1_10972 |
|---|---|
| Locus | scaffold593.1 : 159976 ... 181502 : + |
| To GenomeBrowser | scaffold593.1:159976..181502 |
| Genes list of scaffold | scaffold593.1 |
| Synonym | pfu_aug1.0_5.1_65160 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low quality protein: fanconi anemia group j protein | GO:0004386 GO:0009987 GO:0044424 GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_593.1_10972.t1 | 1 | 1 | RUN | 2 | 128 | 7.7e-12 | 45.1 | 5.4e-15 | 2.0e-11 | 43.7 |
| pfu_aug2.0_593.1_10972.t1 | 1 | 1 | DEAD_2 | 224 | 331 | 7.0e-30 | 103.6 | 3.1e-33 | 1.2e-29 | 102.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_593.1_10972.t1 | gi|676457542|ref|XP_009054684.1| | hypothetical protein LOTGIDRAFT_144987, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_593.1_10972.t1 | gi|390345521|ref|XP_781875.3| | 0.0 | |
| pfu_aug2.0_593.1_10972.t1 | gi|470611685|ref|XP_004315800.1| | PREDICTED: Fanconi anemia group J protein-like, partial [Tursiops truncatus] | 0.0 |
| pfu_aug2.0_593.1_10972.t1 | gi|560901823|ref|XP_006195978.1| | PREDICTED: LOW QUALITY PROTEIN: BRCA1 interacting protein C-terminal helicase 1, partial [Camelus ferus] | 0.0 |
| pfu_aug2.0_593.1_10972.t1 | gi|403274761|ref|XP_003929130.1| | PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group J protein [Saimiri boliviensis boliviensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_593.1_10972.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_593.1_10972.t1 atgagattgtgtgaagttctggaggacatcttccgaaaaggaattaaaagtcaaagctggtttgggaaaggagaaatttg gaactggattgtgaagcttccagggttgtcacagcaaagatgtaacccaacattgtcaatggtcatagacagtgtcaaag actccaaaaaggtcaatacagatgttgggaaaggaagattattttttcgagcagctctaaataagaaagtacttggcatc ccagtacagatcttggctaaggagagagatttggcagtggaatggtatgaaccagatcagagtattttaggaaatgaaat tctaaatgaaatattgcagtcccttttatatgagttaacagaagttcagtttcatctgaaattaagaaatgccagctttc ttgactcgacatggtccttgcctttatataaacagtatgagcttgtgccatgtgcagatctgggattacatgtgcaaaat gccagtggttacctgttggtggtgaaggtggaaccagggagtgtggcggaggaagatggtaagatcacagcaggagacat tttggatgaattatatggggaagctctcagaggggtcaaacttagttatgttcacaccttactacagagatacaaaggtc tccctgtccatctgaatgtggtcaagggtccaggctgtaggttcaatgacagagtgaaaaagatcatcccgtcacagctt catctgaagtccctgggtctgtccgaagcttgggacatagaagatctggctgcacttggcaaacaacacaagttatgccc ttactttggaagcagatcattgaagagagatgcagatataatattttgtccatacaactaccttattgatcctgttgtga gaaatgcaatggaaattcatttgaaggaccaaatagtaatacttgatgaggctcataacatggaagattcggcccgtgag gcggccagcgagagtatcaaggaagaccagttacagaaagctataggggaactggacgaaatgatccgatatgatattaa gaaagctgagcatttgagaataaggcagttgtgtagtggactattgaagttaatccttgagaacctggacagtttacagc agatggactatgacaacgaatataaacattggtcaggatttgacattgtagccaggctggaccagattggtgcaggacca aaacattttcctgatatagagaaatgttatggtaagataatggaggatataggtgacagagaaaagatagtacgagatat gacaggaaaggaaatcaaactcagcagtgccacattacagtgcctggaacatatattcaaaaccttcttctatctgtata aacacgacctcaagtttgtaccagactacagaatggctattgtgaagtccaaggtatttgtgaagcaccaagatactgat gacacatggctgaatccaaaacaaagaggaagggggagaggtgtaatcaatcagttaaccttccagcatgccctaaattt ctggtgtatgaatccaggagtggcgttttcagactttgatatatgtcgttgtgtagtgctgacaagtggaactctctcac cgatgtcgtcgtttgaatcggagctgggtgtgcccttcccaataaagctggaagctagtcatgtgatagaagacaaacag gtctgggttggtgcaataggacatggtccaaatggaagcagccttcagtgtgtttataaaaccatggaaacatggacatt ccaggatgagctaggtgctctagtactaaaggtctgtctggtaagttatacatgcagtggcatagcactagttcctcttg tcacttga |
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Protein
| Protein ID | pfu_aug2.0_593.1_10972.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_593.1_10972.t1 MRLCEVLEDIFRKGIKSQSWFGKGEIWNWIVKLPGLSQQRCNPTLSMVIDSVKDSKKVNTDVGKGRLFFRAALNKKVLGI PVQILAKERDLAVEWYEPDQSILGNEILNEILQSLLYELTEVQFHLKLRNASFLDSTWSLPLYKQYELVPCADLGLHVQN ASGYLLVVKVEPGSVAEEDGKITAGDILDELYGEALRGVKLSYVHTLLQRYKGLPVHLNVVKGPGCRFNDRVKKIIPSQL HLKSLGLSEAWDIEDLAALGKQHKLCPYFGSRSLKRDADIIFCPYNYLIDPVVRNAMEIHLKDQIVILDEAHNMEDSARE AASESIKEDQLQKAIGELDEMIRYDIKKAEHLRIRQLCSGLLKLILENLDSLQQMDYDNEYKHWSGFDIVARLDQIGAGP KHFPDIEKCYGKIMEDIGDREKIVRDMTGKEIKLSSATLQCLEHIFKTFFYLYKHDLKFVPDYRMAIVKSKVFVKHQDTD DTWLNPKQRGRGRGVINQLTFQHALNFWCMNPGVAFSDFDICRCVVLTSGTLSPMSSFESELGVPFPIKLEASHVIEDKQ VWVGAIGHGPNGSSLQCVYKTMETWTFQDELGALVLKVCLVSYTCSGIALVPLVT |
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