Gene
| Gene Model ID | pfu_aug2.0_5951.1_06180 |
|---|---|
| Locus | scaffold5951.1 : 1 ... 22939 : - |
| To GenomeBrowser | scaffold5951.1:1..22939 |
| Genes list of scaffold | scaffold5951.1 |
| Synonym | pfu_aug1.0_5479.1_23796 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_5951.1_06180.t1 | 3 | 1 | Ig_3 | 136 | 178 | 1.9e-10 | 41.0 | 0.00013 | 0.33 | 11.4 |
| pfu_aug2.0_5951.1_06180.t1 | 3 | 1 | I-set | 141 | 219 | 2.2e-28 | 97.9 | 5.9e-13 | 1.5e-09 | 37.6 |
| pfu_aug2.0_5951.1_06180.t1 | 3 | 1 | Ig_2 | 141 | 216 | 2.6e-17 | 62.7 | 1.7e-08 | 4.1e-05 | 23.6 |
| pfu_aug2.0_5951.1_06180.t1 | 3 | 2 | Ig_3 | 227 | 296 | 1.9e-10 | 41.0 | 6.7e-06 | 0.017 | 15.6 |
| pfu_aug2.0_5951.1_06180.t1 | 3 | 2 | Ig_2 | 229 | 309 | 2.6e-17 | 62.7 | 5.7e-09 | 1.4e-05 | 25.1 |
| pfu_aug2.0_5951.1_06180.t1 | 3 | 2 | I-set | 230 | 309 | 2.2e-28 | 97.9 | 8.2e-14 | 2.0e-10 | 40.3 |
| pfu_aug2.0_5951.1_06180.t1 | 3 | 3 | Ig_3 | 325 | 360 | 1.9e-10 | 41.0 | 1.1e-05 | 0.028 | 14.9 |
| pfu_aug2.0_5951.1_06180.t1 | 3 | 3 | Ig_2 | 332 | 360 | 2.6e-17 | 62.7 | 6.6e-05 | 0.16 | 12.0 |
| pfu_aug2.0_5951.1_06180.t1 | 3 | 3 | I-set | 333 | 359 | 2.2e-28 | 97.9 | 2.2e-06 | 0.0054 | 16.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_5951.1_06180.t1 | gi|632960275|ref|XP_007896099.1| | PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein [Callorhinchus milii] | 9.0e-19 |
| pfu_aug2.0_5951.1_06180.t1 | gi|410932807|ref|XP_003979784.1| | 1.0e-18 | |
| pfu_aug2.0_5951.1_06180.t1 | gi|554816292|ref|XP_005918943.1| | PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like isoform X3 [Haplochromis burtoni] | 1.0e-18 |
| pfu_aug2.0_5951.1_06180.t1 | gi|548412222|ref|XP_005740981.1| | PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like isoform X9 [Pundamilia nyererei] | 1.0e-18 |
| pfu_aug2.0_5951.1_06180.t1 | gi|548412219|ref|XP_005740980.1| | PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like isoform X8 [Pundamilia nyererei] | 1.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_5951.1_06180.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5951.1_06180.t1 gaatgttttatggaggaaacgtccgactatgctggtaaaatattgttcaaccttggttgtcggtcttcttatagttgcaa aggaaacatcctttctcctttcggaaagaagaaaaggagaaacgaagcagaagtatttgacggcaattttgatttcaatt atgttaaagattcgtataccaccattggacaacatgcagacaaaagcagaagaatgacaaccttatgtcaacaatgctgt aacgacacggaaatttgtaatggcgggaatctatgtggaactaacaatcgtcattgcgaggacaaatcaacagactgtca gaatcaaaaggctctggaaagcatatgctcaactaaactagcagcccaattctgtttaaaatcttgtaaaatgtgccctt ctccgcccgtaattgtcaatattactcagacacctgctgtggctcgtattggggacaccgtccgtttgacatgttatacc caaggttatccgaaacctacaatagactgggctgttctgacatcaggtcatatcgatgccaacatcaatcttcaaaaaga ggaaattatcatacaaaattttcaactaagtaacgacataccttttgcatgtgaagccaggaatgattacggacaagaca gacttactacacgtttaacaggtaccccggcggtgataatcaatataacacagaccccagctgtagctcatataggagac actgtccgtttgacatgttttaccaaaggctatcctaaacctactattgattgggctgttcagacattagggcaaataaa ttctaacatccatctgaatgggaatgtggttaccatacagagttttcaatccaccaacgacaaacgatttgcctgtcatg caacaaacaaatatggagaggacagacaatctgcaactttgtcagttatgacaacaacaccaacaactacaactggagca acgggatcggcaccggttatactaggcatcattcaatctcctcccgttgctcatataactgatacagttcatttgaaatg caatgctaaaggggtaccgactccaactatttcatgggatacactg |
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Protein
| Protein ID | pfu_aug2.0_5951.1_06180.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_5951.1_06180.t1 ECFMEETSDYAGKILFNLGCRSSYSCKGNILSPFGKKKRRNEAEVFDGNFDFNYVKDSYTTIGQHADKSRRMTTLCQQCC NDTEICNGGNLCGTNNRHCEDKSTDCQNQKALESICSTKLAAQFCLKSCKMCPSPPVIVNITQTPAVARIGDTVRLTCYT QGYPKPTIDWAVLTSGHIDANINLQKEEIIIQNFQLSNDIPFACEARNDYGQDRLTTRLTGTPAVIINITQTPAVAHIGD TVRLTCFTKGYPKPTIDWAVQTLGQINSNIHLNGNVVTIQSFQSTNDKRFACHATNKYGEDRQSATLSVMTTTPTTTTGA TGSAPVILGIIQSPPVAHITDTVHLKCNAKGVPTPTISWDTL |
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