Gene
| Gene Model ID | pfu_aug2.0_596.1_20952 |
|---|---|
| Locus | scaffold596.1 : 54837 ... 81565 : - |
| To GenomeBrowser | scaffold596.1:54837..81565 |
| Genes list of scaffold | scaffold596.1 |
| Synonym | pfu_aug1.0_844.1_65667 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| origin recognition complex subunit 5 isoform x2 | GO:0000808 GO:0005634 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_596.1_20952.t1 | 2 | 1 | AAA_16 | 21 | 168 | 2.5e-10 | 40.6 | 2.8e-12 | 2.3e-09 | 37.4 |
| pfu_aug2.0_596.1_20952.t1 | 1 | 1 | AAA_22 | 45 | 169 | 4.6e-09 | 36.5 | 1.2e-11 | 1.0e-08 | 35.3 |
| pfu_aug2.0_596.1_20952.t1 | 1 | 1 | AAA | 47 | 173 | 8.4e-06 | 26.0 | 2.1e-08 | 1.7e-05 | 25.0 |
| pfu_aug2.0_596.1_20952.t1 | 2 | 1 | Frag1 | 62 | 92 | 1.5e-06 | 27.8 | 0.081 | 67.0 | 2.8 |
| pfu_aug2.0_596.1_20952.t1 | 1 | 1 | ORC5_C | 190 | 362 | 1.10002e-42 | 146.3 | 1.4013e-45 | 1.60028e-42 | 145.8 |
| pfu_aug2.0_596.1_20952.t1 | 2 | 2 | AAA_16 | 219 | 266 | 2.5e-10 | 40.6 | 3.6 | 3000.0 | -2.0 |
| pfu_aug2.0_596.1_20952.t1 | 2 | 2 | Frag1 | 351 | 396 | 1.5e-06 | 27.8 | 1.4e-08 | 1.1e-05 | 24.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_596.1_20952.t1 | gi|260804781|ref|XP_002597266.1| | hypothetical protein BRAFLDRAFT_260887 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_596.1_20952.t1 | gi|149639279|ref|XP_001508134.1| | PREDICTED: origin recognition complex subunit 5 isoform X1 [Ornithorhynchus anatinus] | 0.0 |
| pfu_aug2.0_596.1_20952.t1 | gi|556975456|ref|XP_005995360.1| | PREDICTED: origin recognition complex subunit 5 isoform X3 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_596.1_20952.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_596.1_20952.t1 atggcgtctataagagacagaagtgacaacaatgaggacatggagaacctgttacaaaaactgccgtgtcgcaagttcca gatcaagtttcttctctcattaatcggaaagagagagcagatgacggttccatctatatttatctatgggcatactggta caggaaaatctatggtggttaataccgtttttcagacattagggtttcctcatgtactgatcaattgtatagagtgctac agctcacgattcctgtatgaaaccatattgaatcatttccatggcagcattagttaccatagtgatccaggatcactgat gaaatgtgataatatgaatgattttgtgagaatgttccgacaggtatcagaggagaggggtcttaatgaagagacagtct ttattgttctagataaagcagagagactaagagagatggatgctaatatattacctgcactgctaaggctacaggaactg actaaccagaatgtgtgtgtcatactgttaacagagatagtgtgggagaagtttaggacaggtactgggtactgtgaacc acttgtacttcacttcccagattataatagagatgagctgattgagataatgagtggtagtccaccgacaggttacagtg aggatttctatcgtacgtatcttaaccttgtgcttggtgtgttccagctggtctgtagggatcttatagagctacagcat cttgccactatcaattttagaaagtacacagagccattggaatcattaggacctgatgaaataccagatgctagaaagct atggaagaatgtagaaccacatctaaagaaagctctacagactgtctacctcagggaaatatccagtttacaatgggaga agatgcaggagagtaatgaaagtaatcagcttcctctaccccaggctcctagcagttcaaggacaagtgtagagttacca tactactccaagtttttgttgatagctgcttatttggcatcctacaaccctgctaaatctgacaagagattttttgttaa gcattctggaaaggcaaagaaatccaaaatagaacggaagcatgaaaggggatatacagcacatattgtcagtacggtct cagaatgggtgacggctgtggtatttctcttctttttctttacattcatcagagactttcagaagatcagacttgagata catagtcatgtgagtgtccaacatttagatgatgaaccttatgttcaggatgaaccaaatgaacgaacaccactcagaac ttaa |
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Protein
| Protein ID | pfu_aug2.0_596.1_20952.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_596.1_20952.t1 MASIRDRSDNNEDMENLLQKLPCRKFQIKFLLSLIGKREQMTVPSIFIYGHTGTGKSMVVNTVFQTLGFPHVLINCIECY SSRFLYETILNHFHGSISYHSDPGSLMKCDNMNDFVRMFRQVSEERGLNEETVFIVLDKAERLREMDANILPALLRLQEL TNQNVCVILLTEIVWEKFRTGTGYCEPLVLHFPDYNRDELIEIMSGSPPTGYSEDFYRTYLNLVLGVFQLVCRDLIELQH LATINFRKYTEPLESLGPDEIPDARKLWKNVEPHLKKALQTVYLREISSLQWEKMQESNESNQLPLPQAPSSSRTSVELP YYSKFLLIAAYLASYNPAKSDKRFFVKHSGKAKKSKIERKHERGYTAHIVSTVSEWVTAVVFLFFFFTFIRDFQKIRLEI HSHVSVQHLDDEPYVQDEPNERTPLRT |
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