Gene
| Gene Model ID | pfu_aug2.0_596.1_20953 |
|---|---|
| Locus | scaffold596.1 : 82486 ... 103331 : + |
| To GenomeBrowser | scaffold596.1:82486..103331 |
| Genes list of scaffold | scaffold596.1 |
| Synonym | pfu_aug1.0_11859.1_53752 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_596.1_20953.t2 | 2 | 1 | Claudin_2 | 21 | 44 | 5.5e-08 | 32.6 | 0.3 | 730.0 | -0.3 |
| pfu_aug2.0_596.1_20953.t2 | 2 | 1 | L_HGMIC_fpl | 31 | 112 | 0.0 | 207.7 | 7.1e-19 | 1.7e-15 | 57.4 |
| pfu_aug2.0_596.1_20953.t2 | 2 | 1 | PMP22_Claudin | 37 | 106 | 2.4e-06 | 27.3 | 0.0062 | 15.0 | 5.1 |
| pfu_aug2.0_596.1_20953.t2 | 2 | 2 | L_HGMIC_fpl | 154 | 333 | 0.0 | 207.7 | 0.0 | 4.2039e-45 | 153.8 |
| pfu_aug2.0_596.1_20953.t2 | 2 | 2 | PMP22_Claudin | 159 | 317 | 2.4e-06 | 27.3 | 2.5e-08 | 6.1e-05 | 22.7 |
| pfu_aug2.0_596.1_20953.t2 | 2 | 2 | Claudin_2 | 183 | 319 | 5.5e-08 | 32.6 | 3.1e-09 | 7.6e-06 | 25.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_596.1_20953.t2 | gi|242015612|ref|XP_002428447.1| | conserved hypothetical protein [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_596.1_20953.t2 | gi|617410545|ref|XP_007555291.1| | PREDICTED: lipoma HMGIC fusion partner-like 3 protein [Poecilia formosa] | 0.0 |
| pfu_aug2.0_596.1_20953.t2 | gi|551510855|ref|XP_005806948.1| | PREDICTED: lipoma HMGIC fusion partner-like 3 protein-like [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_596.1_20953.t2 | gi|658917640|ref|XP_008398571.1| | PREDICTED: lipoma HMGIC fusion partner-like 3 protein [Poecilia reticulata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_596.1_20953.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_596.1_20953.t1 atggaacagaaatttaacccagagacagctagaatttaccattttcggtacatgagggaatatcgggctatctgtgtgct gtggggtttactgtccatcatttggtgtatcctcaacttagtaacattcgtccagcctcagtgggtcggagattctccag aaagcccgggctttgggcatttgggcgttttccagtactgttaccctgacaatgcccagggacggtatgtgtgttcagga tctttcacggattttgacacgatcttgaatgattccttcaaagcgacaacgttcttcgtcggagtatcatgtctcctcat gttgatcaccgtagcggctttgctgttgtttttctgcttcaagaaaacctttgtcttttatttttgcggtattatggaac tcatatcagccgtctttatgttcttggcctgtgtcatttacccaagtggctggaacatcgaccaagtgaaagagatttgc ggaaccacctcgggacagtaccagctgggatactgcaacatccgatgggcctacattcttgccatcatcggaatttttga cgcggcaattttggccgttctggcctttttcttggcggccaaacgtgccaagcttgagatttatggaccaaccggaacag taactaaatctgaactgaatggtttttctgcagagagcatgtctaagcgatccatccccatcaaccccgtggtgactgta ccagcggacagcgcccgatcagcttctaacttccagctttaa |
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| Transcript ID | pfu_aug2.0_596.1_20953.t2 |
| Definition | - |
>pfu_aug2.0_596.1_20953.t2 atgcagtataggaactctctggacaaaaagtttgccccttatcagctgcaacagtactaccacagacatgagcggaacca cagagcagtggcggttatctggggcatcatgaccatcatgtttgctatccttaacgttatggccttcgctcagccccact ggataggcgacaccaatgacagtcctggcttcggacatttgggtgtgtttcaagtctgcactccggattacaacaccggc tcgtacttctgtacgggaagtttcacagagttcagcagcattctgacggatgccttccgtgccaccacggtgttctgtgg cgtgcgattcactcttcgattgaactccggggagtcacaaagcagtggccctgaaaagagacagaaaatgttcaaacatt tcaacagagagactgccttacattactatggtaactttaacagggaccaccgcgcggtagccatactatggggtgtaatg tgtatagtattctgcgtactgttagtttgttgcttcgcacagccccactggttgggagacacacttgacagtcccgggta tggccacatgggaatctacaggatatgtaccccatcccaggaccctagtatcagcggatttgcctgtgtgggcaagttca cagagttttcctctatactgaatgatggtttaaaggcggccaccgtatttgtgggcgtgtcctgtctgctgatgctcctc aatgtgggcatgttgctcctcttcttctgcttcaggaaaggcaactacatcttcatcatgtgtggcattatagaagtctt agtggccgtctttatgttcttggcctgtgtcatttacccaagtggctggaacatcgaccaagtgaaagagatttgcggaa ccacctcgggacagtaccagctgggatactgcaacatccgatgggcctacattcttgccatcatcggaatttttgacgcg gcaattttggccgttctggcctttttcttggcggccaaacgtgccaagcttgagatttatggaccaaccggaacagtaac taaatctgaactgaatggtttttctgcagagagcatgtctaagcgatccatccccatcaaccccgtggtgactgtaccag cggacagcgcccgatcagcttctaacttccagctttaa |
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Protein
| Protein ID | pfu_aug2.0_596.1_20953.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_596.1_20953.t1 MEQKFNPETARIYHFRYMREYRAICVLWGLLSIIWCILNLVTFVQPQWVGDSPESPGFGHLGVFQYCYPDNAQGRYVCSG SFTDFDTILNDSFKATTFFVGVSCLLMLITVAALLLFFCFKKTFVFYFCGIMELISAVFMFLACVIYPSGWNIDQVKEIC GTTSGQYQLGYCNIRWAYILAIIGIFDAAILAVLAFFLAAKRAKLEIYGPTGTVTKSELNGFSAESMSKRSIPINPVVTV PADSARSASNFQL |
|
| Protein ID | pfu_aug2.0_596.1_20953.t2 |
| Definition | - |
>pfu_aug2.0_596.1_20953.t2 MQYRNSLDKKFAPYQLQQYYHRHERNHRAVAVIWGIMTIMFAILNVMAFAQPHWIGDTNDSPGFGHLGVFQVCTPDYNTG SYFCTGSFTEFSSILTDAFRATTVFCGVRFTLRLNSGESQSSGPEKRQKMFKHFNRETALHYYGNFNRDHRAVAILWGVM CIVFCVLLVCCFAQPHWLGDTLDSPGYGHMGIYRICTPSQDPSISGFACVGKFTEFSSILNDGLKAATVFVGVSCLLMLL NVGMLLLFFCFRKGNYIFIMCGIIEVLVAVFMFLACVIYPSGWNIDQVKEICGTTSGQYQLGYCNIRWAYILAIIGIFDA AILAVLAFFLAAKRAKLEIYGPTGTVTKSELNGFSAESMSKRSIPINPVVTVPADSARSASNFQL |
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