Gene
Gene Model ID | pfu_aug2.0_596.1_20954 |
---|---|
Locus | scaffold596.1 : 107046 ... 115820 : + |
To GenomeBrowser | scaffold596.1:107046..115820 |
Genes list of scaffold | scaffold596.1 |
Synonym | pfu_aug1.0_374.1_29220 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_596.1_20954.t1 | 1 | 1 | TLD | 21 | 172 | 2.1e-18 | 66.6 | 3.2e-21 | 3.7e-18 | 65.8 |
pfu_aug2.0_596.1_20954.t1 | 1 | 1 | MMR_HSR1 | 195 | 350 | 3.4e-06 | 27.0 | 6.6e-09 | 7.5e-06 | 25.8 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_596.1_20954.t1 | gi|432855027|ref|XP_004068036.1| | PREDICTED: interferon-induced protein 44-like [Oryzias latipes] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_596.1_20954.t1 |
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Definition | - |
>pfu_aug2.0_596.1_20954.t1 atgaacgacaaggaaaaatcctcgctggaagaatggatagggaagaaatgtgattttaagctgctttataaaataagtcg ggatggttgctcgtcacagacattccatactatgtgtgacaaccaggggcctacggtaactgtggtgtataacatcaacc acagtgtctttggtggcttcacattccagaactggaacacttctggtgcatacgtcggcgaccaccaggcatttcttttc cgtttacgacagaatggtcaaagtaatatgaaacagtatccctttctagccaactcaaatggaaataaagctatatattg ccatctaaattatggtccaacgtttggaggtggtcatgacttatttaccttcaatcaaacaactgtccgaacaggaaatt gtttccagctaaacggacattgttatatagggaatacgtttgacagcaaaggcgacgatatatataacattactaatgga cacatgcaagtaacagacttggaagtgtacaaagtgactataaacgatgaagagttgctgagctatcagccatattctga cctggatattcccgctgctaacatacttctccttggtcaagtcggcgcgggcaagtccagttttttcaactctgtcactt ctattttccgaggaaaactttcaagtcgggcatcaagtggtagtgcagaacacagcataacaacaacgtatcgcatgtac accgtgcgccaccaaggtcagcctttcaacttccgactatgtgacacccgtggtatagaggatgatattgggctagatag tcaagatatctgctacattctagatggaaacatctctgatcgctatcaattcaacccatcaattccgatatcaaaagaag ccgctggttttatagaggagccaagacttaaggacaagatacactgtgttgtaatagtggtggatgccagtacattagat gtcatgtcagacaaaattacacaaagattaaaggacagtcaaatacggatgaatcagaaaggcattccacaaataatatt ccttacgaaactggacaaagtttgcacggaagtggatcaagacgtatcaaatatgtacagaagtcctgcagtaaaggcag ccgtggacaaagcagccgacatgtttggactgcctagatcgcacgtgcttcccgcgaaaaactacgagaaagaagacgac ttgaatgttaatataaacattatcattctcagagctttgagaaggatgttggattttgctgacgacttccttgaagaaca actggatcgtcttcagtgcgagaatttgcatgaaatgagcatcaaagattaa |
Protein
Protein ID | pfu_aug2.0_596.1_20954.t1 |
---|---|
Definition | - |
>pfu_aug2.0_596.1_20954.t1 MNDKEKSSLEEWIGKKCDFKLLYKISRDGCSSQTFHTMCDNQGPTVTVVYNINHSVFGGFTFQNWNTSGAYVGDHQAFLF RLRQNGQSNMKQYPFLANSNGNKAIYCHLNYGPTFGGGHDLFTFNQTTVRTGNCFQLNGHCYIGNTFDSKGDDIYNITNG HMQVTDLEVYKVTINDEELLSYQPYSDLDIPAANILLLGQVGAGKSSFFNSVTSIFRGKLSSRASSGSAEHSITTTYRMY TVRHQGQPFNFRLCDTRGIEDDIGLDSQDICYILDGNISDRYQFNPSIPISKEAAGFIEEPRLKDKIHCVVIVVDASTLD VMSDKITQRLKDSQIRMNQKGIPQIIFLTKLDKVCTEVDQDVSNMYRSPAVKAAVDKAADMFGLPRSHVLPAKNYEKEDD LNVNINIIILRALRRMLDFADDFLEEQLDRLQCENLHEMSIKD |