Gene
| Gene Model ID | pfu_aug2.0_599.1_30962 |
|---|---|
| Locus | scaffold599.1 : 140306 ... 151849 : + |
| To GenomeBrowser | scaffold599.1:140306..151849 |
| Genes list of scaffold | scaffold599.1 |
| Synonym | pfu_aug1.0_83506.1_06003 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_599.1_30962.t1 | 3 | 1 | Amidase | 16 | 232 | 0.0 | 388.3 | 2.4e-32 | 7.1e-29 | 100.9 |
| pfu_aug2.0_599.1_30962.t1 | 3 | 2 | Amidase | 258 | 272 | 0.0 | 388.3 | 0.27 | 800.0 | -1.4 |
| pfu_aug2.0_599.1_30962.t1 | 3 | 3 | Amidase | 310 | 631 | 0.0 | 388.3 | 0.0 | 0.0 | 284.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_599.1_30962.t1 | gi|260808698|ref|XP_002599144.1| | hypothetical protein BRAFLDRAFT_225128 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_599.1_30962.t1 | gi|148235233|ref|NP_001080891.1| | glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial [Xenopus laevis] | 0.0 |
| pfu_aug2.0_599.1_30962.t1 | gi|118404870|ref|NP_001072779.1| | glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_599.1_30962.t1 | gi|524992275|ref|XP_005043992.1| | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial [Ficedula albicollis] | 0.0 |
| pfu_aug2.0_599.1_30962.t1 | gi|701425703|ref|XP_010002166.1| | PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial [Chaetura pelagica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_599.1_30962.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_599.1_30962.t1 atgaagggggtgttgtactcggtaaaaccaatatggatgaattcgctatgggatattctggcaggacatgatgtgaatga ttctacaacagttacagatgaattcgtaccttttactctaccagatgaaatatcagttaaaggccttaatataggcattc ctaaggaataccatgcccctgggttgtcatctgatgtactcgctgcttggagacgtgcggcagacatgtttgaggaagcc ggagcccgtgttagtgaggtctcgttaccgcacactcagtactccatatcgtgttatagtgttatatgtgctacagaggt ggcctctaacatggccaggtttgatggagtagaatttggtcatagggctggtgtagatgtttcaacagaagaactataca cagcaacaagacatgaaggtttcaatgacattgttagaggacgcattctggcaggaaactttttcttgctcaagaagaat tacgatgatttcttcttaaaagcacaaaaaatcagacgtttaatttccgaggattttaggcaggtgtttaactccggtat tgatgtcctcctgacacctaccacactgacagaggcacctcagtatagctggttctcacaagctgatggtaggacgagaa ctcaggaacaagacgtttttactcaaccaataaatatggcagctcacctgagcgaagctcaagtgagctattgtcatagc gcaccgtccggcgtccgtccggcgtccggcgtccgtcgngtcacgaggtgtggaagtgtagacagtattcatggtcccgt tagaaatccatggaagtatccatttgaacaagcattaaacatggagaaaaatgatacagatccacagaggtcaactgaaa caggactgagggcagatcacacatcaacacatcacataaaggactggcatatagcaggaggaagctctgggggaagtgct gtggctgtagctacagggacatgtctgggagctcttggttcagatacaggaggttcaacacggaatcctgcggcatactg tggtgtagtgggtcttaaatccacgtacggtttgttgtcaaggcatggtctgatacccctggttaactccttggacgtcc ctggaattcttacaaaaactgtcgatgatgctactatactactaaatattctggctggacatgatgtaaatgattctaca acagttgcagatgaatttttaccttttactctacctgacgaagtctcagttaaaggccttaatataggcattcctaagga ataccatgcccctgggatgtcatctgacgtactcgctgcttggagacgtgcggcagacatgtttgaggaagccggagcat gtgttagtgaggtctcgttaccgcacactcagtactccatatcgtgttacagtgttatatgtgctacagaggtggcttct aacatggccaggtttgatggagtagaatttggtcatagggctggtgtagatgtctcaacagaagaactgtacgcagcaac aagacatgaaggtttcaatgacattgttagagggcgtatcctcgctggaaactttttcttactcaagaagaattacgacg actttttcttaaaggcacaaaaagtcagacgtttaatttccgaggattttaggcgggtgtttaactccggtattgatgtc ctcctgacacctaccacactgacagatgcacctcagtatagctggttctcacaagctgatggtaggaccagaacacagga acaagatgtttttactcaaccaataaatatggcagggatacctgccgtaacagtcccctccagtttatcgagttccggcc ttcctattggacttcagtttattggtcagcacttccaggaacagaaacttctcactgtggccaaatggttcgaacaggag acagattttcaacatttgaatttagactttttagaccaagataatgatgcagataatgatttgtacatgtcgccaaaaat atga |
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Protein
| Protein ID | pfu_aug2.0_599.1_30962.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_599.1_30962.t1 MKGVLYSVKPIWMNSLWDILAGHDVNDSTTVTDEFVPFTLPDEISVKGLNIGIPKEYHAPGLSSDVLAAWRRAADMFEEA GARVSEVSLPHTQYSISCYSVICATEVASNMARFDGVEFGHRAGVDVSTEELYTATRHEGFNDIVRGRILAGNFFLLKKN YDDFFLKAQKIRRLISEDFRQVFNSGIDVLLTPTTLTEAPQYSWFSQADGRTRTQEQDVFTQPINMAAHLSEAQVSYCHS APSGVRPASGVRXVTRCGSVDSIHGPVRNPWKYPFEQALNMEKNDTDPQRSTETGLRADHTSTHHIKDWHIAGGSSGGSA VAVATGTCLGALGSDTGGSTRNPAAYCGVVGLKSTYGLLSRHGLIPLVNSLDVPGILTKTVDDATILLNILAGHDVNDST TVADEFLPFTLPDEVSVKGLNIGIPKEYHAPGMSSDVLAAWRRAADMFEEAGACVSEVSLPHTQYSISCYSVICATEVAS NMARFDGVEFGHRAGVDVSTEELYAATRHEGFNDIVRGRILAGNFFLLKKNYDDFFLKAQKVRRLISEDFRRVFNSGIDV LLTPTTLTDAPQYSWFSQADGRTRTQEQDVFTQPINMAGIPAVTVPSSLSSSGLPIGLQFIGQHFQEQKLLTVAKWFEQE TDFQHLNLDFLDQDNDADNDLYMSPKI |
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