Gene
| Gene Model ID | pfu_aug2.0_599.1_30966 |
|---|---|
| Locus | scaffold599.1 : 206876 ... 224104 : - |
| To GenomeBrowser | scaffold599.1:206876..224104 |
| Genes list of scaffold | scaffold599.1 |
| Synonym | pfu_aug1.0_4590.1_30729 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_599.1_30966.t1 | 10 | 1 | WD40 | 40 | 77 | 1.5e-27 | 94.4 | 2.5e-06 | 0.019 | 14.8 |
| pfu_aug2.0_599.1_30966.t1 | 10 | 2 | WD40 | 97 | 121 | 1.5e-27 | 94.4 | 0.0015 | 11.0 | 6.0 |
| pfu_aug2.0_599.1_30966.t1 | 10 | 3 | WD40 | 231 | 255 | 1.5e-27 | 94.4 | 0.17 | 1300.0 | -0.5 |
| pfu_aug2.0_599.1_30966.t1 | 10 | 4 | WD40 | 285 | 314 | 1.5e-27 | 94.4 | 0.092 | 680.0 | 0.4 |
| pfu_aug2.0_599.1_30966.t1 | 10 | 5 | WD40 | 330 | 356 | 1.5e-27 | 94.4 | 4.8e-06 | 0.035 | 13.9 |
| pfu_aug2.0_599.1_30966.t1 | 10 | 6 | WD40 | 372 | 406 | 1.5e-27 | 94.4 | 1.2e-08 | 9.0e-05 | 22.2 |
| pfu_aug2.0_599.1_30966.t1 | 10 | 7 | WD40 | 423 | 459 | 1.5e-27 | 94.4 | 6.3e-05 | 0.47 | 10.4 |
| pfu_aug2.0_599.1_30966.t1 | 10 | 8 | WD40 | 474 | 501 | 1.5e-27 | 94.4 | 0.0083 | 61.0 | 3.7 |
| pfu_aug2.0_599.1_30966.t1 | 10 | 9 | WD40 | 516 | 541 | 1.5e-27 | 94.4 | 0.0001 | 0.78 | 9.7 |
| pfu_aug2.0_599.1_30966.t1 | 10 | 10 | WD40 | 550 | 585 | 1.5e-27 | 94.4 | 0.0012 | 8.7 | 6.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_599.1_30966.t1 | gi|676474535|ref|XP_009060177.1| | hypothetical protein LOTGIDRAFT_105926 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_599.1_30966.t1 | gi|94733718|emb|CAK10954.1| | novel protein [Danio rerio] | 0.0 |
| pfu_aug2.0_599.1_30966.t1 | gi|66472466|ref|NP_001018475.1| | WD repeat-containing protein 16 [Danio rerio] | 0.0 |
| pfu_aug2.0_599.1_30966.t1 | gi|632943685|ref|XP_007887081.1| | PREDICTED: WD repeat-containing protein 16, partial [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_599.1_30966.t1 | gi|514454272|ref|XP_005002155.1| | PREDICTED: WD repeat-containing protein 16-like isoform X2 [Cavia porcellus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_599.1_30966.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_599.1_30966.t1 atggaagacaatattgatgtaccacgtctacaactggaaggcgccataggtttcaatggtatgtttaattgctggaaggc cgaaatcatagtttggaattttgaagaaaggaaacaacatgcacgattggtcttgcatagtgctaaaatccaagacctgg cgttttcaccgaatgagaagtatctcgtttccttatcaggcgaggaggagggttcgattgttgtttgggatctaaaaact catcaacccattgctggtcgaagagccacggaagggtcagcgatagccaactgtttggtgtactccagtctagactataa tgtttttgttactggaggaggagacacactacgggtatgggaactagatgtggctaataggaaaatcacgccaaccgatg ttatgctaggacagataaagagaaatgtaaaaagtattcagatggcagttaagaacggaaagcctatcttctattgtgga actacaacaggtgatattatggtgatagatattacagacaaagttcttcagtacattggaccaaaagaaaatacatttca acttggtgtggtgactctatcctcttatggatccgaggaggttcttgtaggtagtggaagtggagaactagccctaatgc aatatacgacaggaggggacagaggcagtcattcttcaagctttgaaaagaaatggtcttggaaaggagaaggaagtatt acttcaataagcgtaatggctgaccgagatcagttttatgtcggaacttccaaatctcagatattcaagtttaaatcaga tgaaagtgctaatgtgaacgtgcctgaaggtgtagaattactgagggtatgtcacacaaaagaaatcaaaagtatagacg ttccatttggcacttcggaattattagttactgcacagtctgaagaaattagaatttggagcatcaaaaacaaaagagag ttgaagaatcagcttgtcccgaggatgacgtgcaatagtgttgcaattacaagagatgaaaagatgataattagtgcatg gagtgatggaagcattcgtttatatgattttgacgtccaaaatgaaaacgaaaaatcaggccttgttgagaaattttcac ataaagtccatagcaagagtgtatcggcccttgccgtcatgtcagatggtaaaagggctgtgagtggaagtgatgatgga gaggtacatatctgggaagtcatttctgacattgatgccggaaataatgaaatcatctctttcaaacgtttgggaacaat gacaggagatgaaaatcgtgtagaggaattaaagataagttttaacgacgaggaatgcgtgtcactaagcgccaaaggca catgcattatttgggatttagttactcataaaaggaaaagaacaatattgacaaacactgaagtcaacgctgtatgttat ggaggagataatgatagacaaattataacgggaggaacaaacggaaagcttcagtactggaatattgaaaatggcactct tatccgagaagtacttatatcgggtggttcaattaatgctattgatatgacttcaacgaagaaatatgttatcactggag gcgaagacaaagtattgaaagttctggactacgcaggaggacacacattatttactgggatcggtcacagtgctcctatc atgaaggtcaaaatttacgagaagaacagttccatcgtcagtgttgactcggaaggtgtcatcttaatctggaaattccc gcttttgtcttga |
|
Protein
| Protein ID | pfu_aug2.0_599.1_30966.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_599.1_30966.t1 MEDNIDVPRLQLEGAIGFNGMFNCWKAEIIVWNFEERKQHARLVLHSAKIQDLAFSPNEKYLVSLSGEEEGSIVVWDLKT HQPIAGRRATEGSAIANCLVYSSLDYNVFVTGGGDTLRVWELDVANRKITPTDVMLGQIKRNVKSIQMAVKNGKPIFYCG TTTGDIMVIDITDKVLQYIGPKENTFQLGVVTLSSYGSEEVLVGSGSGELALMQYTTGGDRGSHSSSFEKKWSWKGEGSI TSISVMADRDQFYVGTSKSQIFKFKSDESANVNVPEGVELLRVCHTKEIKSIDVPFGTSELLVTAQSEEIRIWSIKNKRE LKNQLVPRMTCNSVAITRDEKMIISAWSDGSIRLYDFDVQNENEKSGLVEKFSHKVHSKSVSALAVMSDGKRAVSGSDDG EVHIWEVISDIDAGNNEIISFKRLGTMTGDENRVEELKISFNDEECVSLSAKGTCIIWDLVTHKRKRTILTNTEVNAVCY GGDNDRQIITGGTNGKLQYWNIENGTLIREVLISGGSINAIDMTSTKKYVITGGEDKVLKVLDYAGGHTLFTGIGHSAPI MKVKIYEKNSSIVSVDSEGVILIWKFPLLS |
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