Gene
| Gene Model ID | pfu_aug2.0_599.1_30969 |
|---|---|
| Locus | scaffold599.1 : 288897 ... 301654 : - |
| To GenomeBrowser | scaffold599.1:288897..301654 |
| Genes list of scaffold | scaffold599.1 |
| Synonym | pfu_aug1.0_2701.1_44459 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_599.1_30969.t1 | 4 | 1 | LRR_4 | 23 | 56 | 6.1e-12 | 44.8 | 8.4e-08 | 0.00021 | 20.8 |
| pfu_aug2.0_599.1_30969.t1 | 3 | 1 | LRR_8 | 24 | 55 | 8.3e-06 | 25.4 | 2.2e-06 | 0.0055 | 16.4 |
| pfu_aug2.0_599.1_30969.t1 | 6 | 1 | LRR_6 | 24 | 43 | 9.3e-18 | 62.2 | 3.9e-06 | 0.0096 | 15.9 |
| pfu_aug2.0_599.1_30969.t1 | 6 | 2 | LRR_6 | 46 | 73 | 9.3e-18 | 62.2 | 0.0093 | 23.0 | 5.4 |
| pfu_aug2.0_599.1_30969.t1 | 6 | 3 | LRR_6 | 76 | 99 | 9.3e-18 | 62.2 | 0.00022 | 0.53 | 10.5 |
| pfu_aug2.0_599.1_30969.t1 | 4 | 2 | LRR_4 | 78 | 115 | 6.1e-12 | 44.8 | 2.2e-06 | 0.0053 | 16.3 |
| pfu_aug2.0_599.1_30969.t1 | 3 | 2 | LRR_8 | 78 | 139 | 8.3e-06 | 25.4 | 0.00037 | 0.92 | 9.3 |
| pfu_aug2.0_599.1_30969.t1 | 6 | 4 | LRR_6 | 102 | 126 | 9.3e-18 | 62.2 | 0.00014 | 0.34 | 11.1 |
| pfu_aug2.0_599.1_30969.t1 | 4 | 3 | LRR_4 | 120 | 143 | 6.1e-12 | 44.8 | 0.00082 | 2.0 | 8.1 |
| pfu_aug2.0_599.1_30969.t1 | 6 | 5 | LRR_6 | 129 | 149 | 9.3e-18 | 62.2 | 1.1e-05 | 0.028 | 14.4 |
| pfu_aug2.0_599.1_30969.t1 | 6 | 6 | LRR_6 | 156 | 176 | 9.3e-18 | 62.2 | 0.02 | 51.0 | 4.4 |
| pfu_aug2.0_599.1_30969.t1 | 4 | 4 | LRR_4 | 157 | 166 | 6.1e-12 | 44.8 | 1.0 | 2500.0 | -1.8 |
| pfu_aug2.0_599.1_30969.t1 | 3 | 3 | LRR_8 | 158 | 206 | 8.3e-06 | 25.4 | 0.11 | 280.0 | 1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_599.1_30969.t1 | gi|156391949|ref|XP_001635812.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_599.1_30969.t1 | gi|390349919|ref|XP_003727308.1| | PREDICTED: protein AMN1 homolog isoform X2 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_599.1_30969.t1 | gi|578822810|ref|XP_006719117.1| | PREDICTED: protein AMN1 homolog isoform X1 [Homo sapiens] | 0.0 |
| pfu_aug2.0_599.1_30969.t1 | gi|676490331|ref|XP_009065234.1| | hypothetical protein LOTGIDRAFT_184154 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_599.1_30969.t1 | gi|71052069|gb|AAH45831.2| | AMN1 protein [Homo sapiens] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_599.1_30969.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_599.1_30969.t1 atgcaagactcttttagatgcgtcagtacattttattactttagttatgctaaatggaaagtccatgagtctttacgagt ccttgatttgagtgagtcagatatatcagaccagggtttgtctagtctccgcagatgtccgaagttacagaaaattgacc ttaattctgccaaaaagtctagaactatggtaacatcacaaggtatcatatccatgtcccagtcttgtcataacttacaa acagtatatctacgcagatgtctaaatataaccgacgaggccgtcatatcattatcagaaaattgtccgcagctcagact cctcaatgtgggaggatgtacattactcacagatcaatcattacagttcctcgctcagaattccaaattcctcaaatgtc tcaatatgtcaaatacaaaggtaacagataatggtgtcatagctcttacatcaggacagtgtgctcaaactctcaaggag attcatatcaatggttgtgtagcccttacagatgaagcagtagaagcagtactgcagttttgtccactcatagaaatcct gctcttccatgcatgtccaaaaatcacagagaattccaggcaagctctcgaggatctgacaattcagcggaaatctccga tgaaacaagtaacatggacaatatactga |
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Protein
| Protein ID | pfu_aug2.0_599.1_30969.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_599.1_30969.t1 MQDSFRCVSTFYYFSYAKWKVHESLRVLDLSESDISDQGLSSLRRCPKLQKIDLNSAKKSRTMVTSQGIISMSQSCHNLQ TVYLRRCLNITDEAVISLSENCPQLRLLNVGGCTLLTDQSLQFLAQNSKFLKCLNMSNTKVTDNGVIALTSGQCAQTLKE IHINGCVALTDEAVEAVLQFCPLIEILLFHACPKITENSRQALEDLTIQRKSPMKQVTWTIY |
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