Gene
| Gene Model ID | pfu_aug2.0_601.1_04387 |
|---|---|
| Locus | scaffold601.1 : 106702 ... 115793 : - |
| To GenomeBrowser | scaffold601.1:106702..115793 |
| Genes list of scaffold | scaffold601.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tetraspanin-33-like | GO:0016021 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_601.1_04387.t1 | 2 | 1 | Tetraspannin | 12 | 67 | 9.9e-16 | 57.6 | 3.1e-14 | 4.7e-10 | 39.1 |
| pfu_aug2.0_601.1_04387.t1 | 2 | 2 | Tetraspannin | 74 | 108 | 9.9e-16 | 57.6 | 1.4e-08 | 0.00021 | 20.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_601.1_04387.t1 | gi|676487157|ref|XP_009064203.1| | hypothetical protein LOTGIDRAFT_235927 [Lottia gigantea] | 1.0e-13 |
| pfu_aug2.0_601.1_04387.t1 | gi|597758645|ref|XP_007241023.1| | PREDICTED: tetraspanin-33-like, partial [Astyanax mexicanus] | 1.0e-11 |
| pfu_aug2.0_601.1_04387.t1 | gi|554833562|ref|XP_005927311.1| | PREDICTED: tetraspanin-33-like [Haplochromis burtoni] | 2.0e-11 |
| pfu_aug2.0_601.1_04387.t1 | gi|676487153|ref|XP_009064202.1| | hypothetical protein LOTGIDRAFT_235926 [Lottia gigantea] | 2.0e-10 |
| pfu_aug2.0_601.1_04387.t1 | gi|734600141|ref|XP_010755149.1| | PREDICTED: tetraspanin-33-like [Larimichthys crocea] | 1.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_601.1_04387.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_601.1_04387.t1 atgaaacagaagacaatcagggatgcctttgattttttcctggatccggccatgcttatggtgaccgctgggtccatcat cgtcttcattactttttttggttgtatgggatcgcttagagagaatacttgttttcttaaaacgtttaactatatattag ggatcattttcctaggagagctgactatagtcggaaaagcagtggctggaccatacatatctaatatataccaaccaggt tgtttacacgcattaggaaattggataaatggtaacgccatggttttagggggtgttttactaggaatactgttaccaca gatttattttggttctgcctccatacgggggttcgcgattgctttgttaatggagacttacacgattatgtcaaatccgg ttatgtccaaatag |
|
Protein
| Protein ID | pfu_aug2.0_601.1_04387.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_601.1_04387.t1 MKQKTIRDAFDFFLDPAMLMVTAGSIIVFITFFGCMGSLRENTCFLKTFNYILGIIFLGELTIVGKAVAGPYISNIYQPG CLHALGNWINGNAMVLGGVLLGILLPQIYFGSASIRGFAIALLMETYTIMSNPVMSK |
|