Gene
| Gene Model ID | pfu_aug2.0_601.1_04391 |
|---|---|
| Locus | scaffold601.1 : 228603 ... 237573 : - |
| To GenomeBrowser | scaffold601.1:228603..237573 |
| Genes list of scaffold | scaffold601.1 |
| Synonym | pfu_aug1.0_1728.1_37098 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_601.1_04391.t1 | 3 | 1 | LRR_4 | 187 | 225 | 4.5e-16 | 58.0 | 3.2e-09 | 7.9e-06 | 25.3 |
| pfu_aug2.0_601.1_04391.t1 | 2 | 1 | LRR_8 | 187 | 214 | 2.0e-13 | 49.8 | 0.00026 | 0.64 | 9.8 |
| pfu_aug2.0_601.1_04391.t1 | 5 | 1 | LRR_1 | 187 | 206 | 1.1e-09 | 36.9 | 0.00019 | 0.46 | 10.7 |
| pfu_aug2.0_601.1_04391.t1 | 2 | 2 | LRR_8 | 209 | 267 | 2.0e-13 | 49.8 | 2.7e-15 | 6.7e-12 | 44.9 |
| pfu_aug2.0_601.1_04391.t1 | 5 | 2 | LRR_1 | 210 | 229 | 1.1e-09 | 36.9 | 0.0076 | 19.0 | 5.7 |
| pfu_aug2.0_601.1_04391.t1 | 3 | 2 | LRR_4 | 232 | 269 | 4.5e-16 | 58.0 | 4.4e-13 | 1.1e-09 | 37.7 |
| pfu_aug2.0_601.1_04391.t1 | 5 | 3 | LRR_1 | 233 | 254 | 1.1e-09 | 36.9 | 4.9e-06 | 0.012 | 15.5 |
| pfu_aug2.0_601.1_04391.t1 | 5 | 4 | LRR_1 | 256 | 272 | 1.1e-09 | 36.9 | 0.00098 | 2.4 | 8.5 |
| pfu_aug2.0_601.1_04391.t1 | 3 | 3 | LRR_4 | 279 | 287 | 4.5e-16 | 58.0 | 4.1 | 10000.0 | -3.8 |
| pfu_aug2.0_601.1_04391.t1 | 5 | 5 | LRR_1 | 279 | 289 | 1.1e-09 | 36.9 | 2.1 | 5200.0 | -1.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_601.1_04391.t1 | gi|676463438|ref|XP_009056597.1| | hypothetical protein LOTGIDRAFT_232977 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_601.1_04391.t1 | gi|557025326|ref|XP_006012820.1| | PREDICTED: leucine-rich repeat-containing protein 63 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_601.1_04391.t1 | gi|198429265|ref|XP_002130160.1| | PREDICTED: uncharacterized protein LOC100180427 [Ciona intestinalis] | 0.0 |
| pfu_aug2.0_601.1_04391.t1 | gi|585712917|ref|XP_006825000.1| | PREDICTED: leucine-rich repeat-containing protein 63-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_601.1_04391.t1 | gi|558138806|ref|XP_006118070.1| | PREDICTED: leucine-rich repeat-containing protein 63 [Pelodiscus sinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_601.1_04391.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_601.1_04391.t1 atgccatacgaggatgatgaactgacaggaagtccgaaaatggggcattctcccgtccctagtgttgttccaagcttagt ttcaccccctccttcagaatcaaacccaacaagacggacttattatagaaatggattcggaataactccacaaagtgcta catcatttctaactagagatgacaagaaatatgtgctagaccccgtttatagagaaaaaaccagcttaggaacatacgta gatggaaagtcactagtcaaaccttttaaaccgagagggccagaaagttttcctgccaggcctccccggaaagtgaatga gatttatccaatggacacaaatgatgatttcagatattatcaacctccagcatttacactcgataactttatgtatcaca tctcagaaatgcaaaatataccgttagttaaagtgcgacaagcaattacttcaaaacataattataagaaacttgccaat cttcttgccaagcagtacatcacaccaacaacacagactgtactacatctatttcctcgtgagattttggatgtacggca gttagagatcttgaagttgcggaataacccattaagggagattcccaccgacatacatagactgagaaatctgaggattt tggtggcttccttctgtcttctcactaatcttccaatggggttatttgccttacctaagttgattcatttagacatctcc tacaacaaacttacctttattccaaatgaaatcagtaacatgaggaacttgcgtgagttgaacatggaggggaaccagtt accagctatgccttgtggtgccttattgttagacctattctacctgaatgtcaagaacaactttatgcatccgttgttct ggaaggaaaatactcagaatcaaccacagaggttgatagacatggcttcactagcattaattgagtctgacatcattaaa gaaccagacaagcttccagagtctgtgaaaaaggtcctatccaatcgttccatttgtgactgttgccatggcgccctgta cggaccaggtctcagaattatacgtccagttagtaaactacacggtataaataatttaccgtttatgttccgagcatgtt cgccgagctgtctccaagtattcaaacacagcaaagagacgctatcggaaattctgtacggagtgagaggatcatctgga gaggaagaagaggaagaggagtga |
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Protein
| Protein ID | pfu_aug2.0_601.1_04391.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_601.1_04391.t1 MPYEDDELTGSPKMGHSPVPSVVPSLVSPPPSESNPTRRTYYRNGFGITPQSATSFLTRDDKKYVLDPVYREKTSLGTYV DGKSLVKPFKPRGPESFPARPPRKVNEIYPMDTNDDFRYYQPPAFTLDNFMYHISEMQNIPLVKVRQAITSKHNYKKLAN LLAKQYITPTTQTVLHLFPREILDVRQLEILKLRNNPLREIPTDIHRLRNLRILVASFCLLTNLPMGLFALPKLIHLDIS YNKLTFIPNEISNMRNLRELNMEGNQLPAMPCGALLLDLFYLNVKNNFMHPLFWKENTQNQPQRLIDMASLALIESDIIK EPDKLPESVKKVLSNRSICDCCHGALYGPGLRIIRPVSKLHGINNLPFMFRACSPSCLQVFKHSKETLSEILYGVRGSSG EEEEEEE |
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