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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_603.1_10977
Locus scaffold603.1 : 44617 ... 46815 : -
To GenomeBrowser scaffold603.1:44617..46815
Genes list of scaffold scaffold603.1
Synonym pfu_aug1.0_26229.1_55132

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_603.1_10977.t1 6 1 zf-B_box 11 21 1.2e-10 41.0 5.2 6000.0 -2.8
pfu_aug2.0_603.1_10977.t1 1 1 zf-RING_2 15 59 1.3e-07 31.3 1.1e-10 1.3e-07 31.3
pfu_aug2.0_603.1_10977.t1 3 1 zf-RING_5 16 59 3.3e-07 29.9 2.9e-10 3.3e-07 29.9
pfu_aug2.0_603.1_10977.t1 3 1 zf-C3HC4_4 16 58 1.6e-06 27.8 1.4e-09 1.6e-06 27.8
pfu_aug2.0_603.1_10977.t1 3 1 zf-C3HC4 16 58 6.4e-09 35.3 5.6e-12 6.4e-09 35.3
pfu_aug2.0_603.1_10977.t1 4 1 zf-C3HC4_2 16 58 2.8e-07 30.4 2.4e-10 2.8e-07 30.4
pfu_aug2.0_603.1_10977.t1 6 2 zf-B_box 30 43 1.2e-10 41.0 0.13 140.0 2.4
pfu_aug2.0_603.1_10977.t1 6 3 zf-B_box 53 60 1.2e-10 41.0 0.9 1000.0 -0.4
pfu_aug2.0_603.1_10977.t1 6 4 zf-B_box 94 139 1.2e-10 41.0 5.8e-05 0.067 13.1
pfu_aug2.0_603.1_10977.t1 4 2 zf-C3HC4_2 97 128 2.8e-07 30.4 0.0046 5.2 7.1
pfu_aug2.0_603.1_10977.t1 3 2 zf-RING_5 97 129 3.3e-07 29.9 0.0027 3.1 7.5
pfu_aug2.0_603.1_10977.t1 3 2 zf-C3HC4 99 130 6.4e-09 35.3 0.13 140.0 2.1
pfu_aug2.0_603.1_10977.t1 3 2 zf-C3HC4_4 114 130 1.6e-06 27.8 0.15 170.0 2.2
pfu_aug2.0_603.1_10977.t1 3 3 zf-RING_5 158 177 3.3e-07 29.9 2.2 2500.0 -1.8
pfu_aug2.0_603.1_10977.t1 6 5 zf-B_box 160 197 1.2e-10 41.0 1.1e-13 1.2e-10 41.0
pfu_aug2.0_603.1_10977.t1 4 3 zf-C3HC4_2 173 186 2.8e-07 30.4 8.1 9300.0 -3.3
pfu_aug2.0_603.1_10977.t1 3 3 zf-C3HC4 173 186 6.4e-09 35.3 8.4 9600.0 -3.7
pfu_aug2.0_603.1_10977.t1 3 3 zf-C3HC4_4 177 186 1.6e-06 27.8 5.1 5900.0 -2.8
pfu_aug2.0_603.1_10977.t1 4 4 zf-C3HC4_2 667 673 2.8e-07 30.4 6.0 6900.0 -2.9
pfu_aug2.0_603.1_10977.t1 6 6 zf-B_box 668 675 1.2e-10 41.0 5.1 5800.0 -2.7

Transcript
Transcript IDpfu_aug2.0_603.1_10977.t1
Definition-
>pfu_aug2.0_603.1_10977.t1
atggcagaatcatccttgtcaactcttaccgatgattttctcacttgcaatatttgtctggaaatctaccaggaacctaa
gatcttatcctgcctgcattcgttttgccgaacatgtttggaaaaacatctaggtaaaagcaagagcaacaaaaatttga
tatgccccctttgccgcgaagtaactcttttgaagcaagagagagtagaagaactgaagaacaatttcttcatccaaaat
ctgatagatttcagcttttcaacatcaactcaaatcaaggaaaaacaatgctcgtattgctctcttattgaaaagtccaa
tcctgcctttgggaagtgtctcacttgtggcgattttctatgttctgaatgctacagtagacatacacttacaacggaga
cctttgaccatgaaatcgcgacgcttgctgacctacaaagcggtagatacaacgagaaactcagatcaagtcaacatatt
ccctgtcaggagcacaagaaggaatttcttagatatttctgcgatacatgcgatgttcccgtatgccgagactgcgtgat
tcttggtcaccgacagggtcatgatataatagaaccatccaaggcgatcgagaaaaggcgactggagattggttgtttgc
tcgaggggttgaacggaaagctagaagaaatcaaagaaagaagtgcgatactgaaggaagaagaaagtagagtggatgta
acagaacgtgacatgtcacaattgatacaagatgcaaccgacaggtgggtggaaatgattaaaaatgaagggataaaagc
tcaagttctcttggaggcctgcattgaaaaaagaagagaagagctggtagcgactagaagaaaacaagatgaaaagttac
ttctcttaaaaaagtcgacggaattttgtcaaaaagtagtcagagatggactagaaggagaaatcatatttcttcagcaa
atgatgcgagagcggctttcattcctagagacaagcgtccagtgtacagatgctcttacaccatgggtgccgccaaccat
acaaatatcgaaaatgtttgatgaaactcttgtgcatgatttattcaggttcgaagagtcatgttcaccaacaacaaaat
catgtgcgaaaggaaatgccgctgttaattatgaacatcaagaaacctacttatcaagttcgatgccgaaatcactggct
aaatcttgtccaaaccttgacgatgtagctaacaaggatccaaaattgtcaaaaggaaatgacagatcaaaaggaaagag
ggaagatcctaaagataaacaagattctgttggactcattcgaatacgtgatataaattgcgatgctggaggagatgtga
acagatcaaaattaacatcggtagcttgggtgaatgaggattcatttgtcgttgtagacgaagccaatgggaaaataaag
caatatagcacgaacggcaagctgttacactcagtcaaattgaaagatgtgttaactgtgacatgttccaaaacactcat
atactgtggactgagtagcggtcagattaaagttctcaatgcaaaatttgacatccttgatgttaagtctcagaaatacg
gaaactgtgttccagttgcgacggggaaattgaaatcacgtgtccttttgctaggtagttcatctatgaatgtcgtaagc
aaggaaacagaaatttctagatccatgccttatacagataaaactggcaaacagataaagatgaagccaatgttccccca
ttgttgtcgagaggacaaagttgtcgtttcggactggaattctggatcagtatgcgttataaatacagatggaagaatat
cagacacatatgaaaaggaaagcagcacttggctaccgggcggactgggatgtgacaacaaaaataatatatttatagct
gactattatagtaatgagttaactgtattgaattctaagtgtagatttctgacaaccctcaagatgcccaatgtttataa
cccaaggtgcatggcgtgttctgacagcaacaaacttcttataacatttaataatagcgttgccatgttccaaatttcaa
aaggaaaaatctaa

Protein
Protein IDpfu_aug2.0_603.1_10977.t1
Definition-
>pfu_aug2.0_603.1_10977.t1
MAESSLSTLTDDFLTCNICLEIYQEPKILSCLHSFCRTCLEKHLGKSKSNKNLICPLCREVTLLKQERVEELKNNFFIQN
LIDFSFSTSTQIKEKQCSYCSLIEKSNPAFGKCLTCGDFLCSECYSRHTLTTETFDHEIATLADLQSGRYNEKLRSSQHI
PCQEHKKEFLRYFCDTCDVPVCRDCVILGHRQGHDIIEPSKAIEKRRLEIGCLLEGLNGKLEEIKERSAILKEEESRVDV
TERDMSQLIQDATDRWVEMIKNEGIKAQVLLEACIEKRREELVATRRKQDEKLLLLKKSTEFCQKVVRDGLEGEIIFLQQ
MMRERLSFLETSVQCTDALTPWVPPTIQISKMFDETLVHDLFRFEESCSPTTKSCAKGNAAVNYEHQETYLSSSMPKSLA
KSCPNLDDVANKDPKLSKGNDRSKGKREDPKDKQDSVGLIRIRDINCDAGGDVNRSKLTSVAWVNEDSFVVVDEANGKIK
QYSTNGKLLHSVKLKDVLTVTCSKTLIYCGLSSGQIKVLNAKFDILDVKSQKYGNCVPVATGKLKSRVLLLGSSSMNVVS
KETEISRSMPYTDKTGKQIKMKPMFPHCCREDKVVVSDWNSGSVCVINTDGRISDTYEKESSTWLPGGLGCDNKNNIFIA
DYYSNELTVLNSKCRFLTTLKMPNVYNPRCMACSDSNKLLITFNNSVAMFQISKGKI

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