Gene
| Gene Model ID | pfu_aug2.0_603.1_10981 |
|---|---|
| Locus | scaffold603.1 : 156776 ... 176600 : + |
| To GenomeBrowser | scaffold603.1:156776..176600 |
| Genes list of scaffold | scaffold603.1 |
| Synonym | pfu_aug1.0_17452.1_69097 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna repair and recombination protein rad54- partial | GO:0003677 GO:0005524 GO:0008152 GO:0016817 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_603.1_10981.t2 | 2 | 1 | Rad54_N | 48 | 124 | 4.5e-07 | 29.8 | 8.1e-10 | 1.5e-06 | 28.1 |
| pfu_aug2.0_603.1_10981.t2 | 2 | 1 | SNF2_N | 157 | 186 | 2.1e-38 | 131.7 | 2.3e-05 | 0.043 | 12.5 |
| pfu_aug2.0_603.1_10981.t2 | 1 | 1 | DEAD | 158 | 315 | 7.0e-07 | 28.8 | 6.6e-10 | 1.2e-06 | 28.0 |
| pfu_aug2.0_603.1_10981.t2 | 2 | 2 | SNF2_N | 199 | 368 | 2.1e-38 | 131.7 | 4.0e-37 | 7.4e-34 | 116.8 |
| pfu_aug2.0_603.1_10981.t2 | 2 | 1 | Helicase_C | 223 | 247 | 4.3e-14 | 52.1 | 1.0 | 1800.0 | -1.2 |
| pfu_aug2.0_603.1_10981.t2 | 2 | 2 | Rad54_N | 336 | 348 | 4.5e-07 | 29.8 | 2.2 | 4100.0 | -2.7 |
| pfu_aug2.0_603.1_10981.t2 | 1 | 1 | HDA2-3 | 420 | 569 | 1.7e-06 | 27.1 | 1.9e-09 | 3.5e-06 | 26.0 |
| pfu_aug2.0_603.1_10981.t2 | 2 | 2 | Helicase_C | 459 | 538 | 4.3e-14 | 52.1 | 1.2e-16 | 2.1e-13 | 49.8 |
Transcript
| Transcript ID | pfu_aug2.0_603.1_10981.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_603.1_10981.t1 atgaggagaagtttggctcccagccagaggtgtggatcatcgtttacctcttgtaagaaaagatattcagacggagatgt catattgtcacagcagataaagaaatccagaatttgtgtttctgatgacgaggaagatgatggacaagacttgagaaaac ccctagcatcaatcactaacaccacatcaaatatcaccaactcatctcatgaggctttcattaagaagatattatccaaa ccttttaaagtaccaattccaaattataaagggtcagcctttgccagtcgagtgttaggaatcagacgtcagggtagtag acagcctttacatgatccgtgtgaggaaggagcccttatattgtacagccctccagagttatccgcccatgaacagctga agattgatttagagaaacaaccagtttttgttgttgtggatccaatattgactaaggttctacgtcctcatcaaagagag ggagtaaaatttatgtatgactgtgtgacaggacagcagatagaagataattatggttgtatcatggctgatgaaatgcg tcagagtccagattgttgtcctttgatagacaaagctgttgtagtctcacctagcagtttagtcaagaactggtataatg aaatcagcaagtggttaagtggcaaggtcaatgctatagctatagactcgggcactaaaaaggaaattgataagcagctg agtcagttcatgcagcagcaaggaagacgtaatcctttccctatccttattatatcatatgaaacatttcgtctccatgc tcatgtgatgcatcgagggtcagtgggattggtcatctgtgatgagggtcatagattgaagaattctgagaatcagactt accaagctttgaatggtctgaatgccaagagacggatcctgctatctggtaccccaatacagaatgacttattggaatac ttcagtcttatacactttgtaaatggaggcattctaggcacggctcaggagtttaagcgtagatttgagacgcccatcct gaggggtcgggatgctgatgccacagacgaagctcataagaaaggacaagaaaaacttcaagagagacccaatttttgca agaacattgcttatagagcgaatttcagcatcaaaaacccagatctgatatttgacaaatgtcaagagggttcagaagga tatgaaggaacgttagagttattcccccctggtcatcacacaaggactgtcagaccagagttgtcaggaaaagtcctggt attagactgtttgttggcattgataaaggctcagaccagtgataaagtagtcctggtatcaaactatacacagactctgg atttgtttgaaacactttgtagacaaagagggtatctgtttgtaagattggacggcagtatgtctataaagaaaagagca aagattgtggagaagtttaataatccatgtaaaacatattttgaatttcagagtccagaatttatcttcatgttgagcag taaagctggtggatgtggtttgaatttgataggagccaatcgtcttgtgatgtttgatcctgactggaatccagccaatg acgagcaagctatggccagatgctggagagatggacagaaaaaacagtgttacatatacagactcatagctacgggtacg atagaggagaagatattccagcgacaggcacataaaaaagctttaagtagctgtgtggtagataaggaggaagatgtaga gagacacttcagtctgggagatctcagggacttgtttaaactcaatgaaaatactatcagtgatactcacgaaaagttca agtgccgtcgatgtgtcaacaatatccaggtaaaacctccgccaccagatagtgactgtaattctgatctgtctcaatgg aatcattgtgccgatagaaaaggactagatgacattttgcttaaaggagcatgggaatcggctatctcatttgtgttcca ccatagatctcatgacgaacaacgaaaaactgtgtag |
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| Transcript ID | pfu_aug2.0_603.1_10981.t2 |
| Definition | - |
>pfu_aug2.0_603.1_10981.t2 atgaggagaagtttggctcccagccagaggtgtggatcatcgtttacctcttgtaagaaaagatattcagacggagatgt catattgtcacagcagataaagaaatccagaatttgtgtttctgatgacgaggaagatgatggacaagacttgagaaaac ccctagcatcaatcactaacaccacatcaaatatcaccaactcatctcatgaggctttcattaagaagatattatccaaa ccttttaaagtaccaattccaaattataaagggtcagcctttgccagtcgagtgttaggaatcagacgtcagggtagtag acagcctttacatgatccgtgtgaggaaggagcccttatattgtacagccctccagagttatccgcccatgaacagctga agattgatttagagaaacaaccagtttttgttgttgtggatccaatattgactaaggttctacgtcctcatcaaagagag ggagtaaaatttatgtatgactgtgtgacaggacagcagatagaagataattatggttgtatcatggctgatgaaatgcg tcagagtccagattgttgtcctttgatagacaaagctgttgtagtctcacctagcagtttagtcaagaactggtataatg aaatcagcaagtggttaagtggcaaggtcaatgctatagctatagactcgggcactaaaaaggaaattgataagcagctg agtcagttcatgcagcagcaaggaagacgtaatcctttccctatccttattatatcatatgaaacatttcgtctccatgc tcatgtgatgcatcgagggtcagtgggattggtcatctgtgatgagggtcatagattgaagaattctgagaatcagactt accaagctttgaatggtctgaatgccaagagacggatcctgctatctggtaccccaatacagaatgacttattggaatac ttcagtcttatacactttgtaaatggaggcattctaggcacggctcaggagtttaagcgtagatttgagacgcccatcct gaggggtcgggatgctgatgccacagacgaagctcataagaaaggacaagaaaaacttcaagagagacccaatttttgca agaacattgcttatagagcgaatttcagcatcaaaaacccagatctgatatttgacaaatgtcaagagggttcagaagga tatgaaggaacgttagagttattcccccctggtcatcacacaaggactgtcagaccagagttgtcaggaaaagtcctggt attagactgtttgttggcattgataaaggctcagaccagtgataaagtagtcctggtatcaaactatacacagactctgg atttgtttgaaacactttgtagacaaagagggtatctgtttgtaagattggacggcagtatgtctataaagaaaagagca aagattgtggagaagtttaataatccatgtagtccagaatttatcttcatgttgagcagtaaagctggtggatgtggttt gaatttgataggagccaatcgtcttgtgatgtttgatcctgactggaatccagccaatgacgagcaagctatggccagat gctggagagatggacagaaaaaacagtgttacatatacagactcatagctacgggtacgatagaggagaagatattccag cgacaggcacataaaaaagctttaagtagctgtgtggtagataaggaggaagatgtagagagacacttcagtctgggaga tctcagggacttgtttaaactcaatgaaaatactatcagtgatactcacgaaaagttcaagtgccgtcgatgtgtcaaca atatccaggtaaaacctccgccaccagatagtgactgtaattctgatctgtctcaatggaatcattgtgccgatagaaaa ggactagatgacattttgcttaaaggagcatgggaatcggctatctcatttgtgttccaccatagatctcatgacgaaca acgaaaaactgtgtag |
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Protein
| Protein ID | pfu_aug2.0_603.1_10981.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_603.1_10981.t1 MRRSLAPSQRCGSSFTSCKKRYSDGDVILSQQIKKSRICVSDDEEDDGQDLRKPLASITNTTSNITNSSHEAFIKKILSK PFKVPIPNYKGSAFASRVLGIRRQGSRQPLHDPCEEGALILYSPPELSAHEQLKIDLEKQPVFVVVDPILTKVLRPHQRE GVKFMYDCVTGQQIEDNYGCIMADEMRQSPDCCPLIDKAVVVSPSSLVKNWYNEISKWLSGKVNAIAIDSGTKKEIDKQL SQFMQQQGRRNPFPILIISYETFRLHAHVMHRGSVGLVICDEGHRLKNSENQTYQALNGLNAKRRILLSGTPIQNDLLEY FSLIHFVNGGILGTAQEFKRRFETPILRGRDADATDEAHKKGQEKLQERPNFCKNIAYRANFSIKNPDLIFDKCQEGSEG YEGTLELFPPGHHTRTVRPELSGKVLVLDCLLALIKAQTSDKVVLVSNYTQTLDLFETLCRQRGYLFVRLDGSMSIKKRA KIVEKFNNPCKTYFEFQSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARCWRDGQKKQCYIYRLIATGT IEEKIFQRQAHKKALSSCVVDKEEDVERHFSLGDLRDLFKLNENTISDTHEKFKCRRCVNNIQVKPPPPDSDCNSDLSQW NHCADRKGLDDILLKGAWESAISFVFHHRSHDEQRKTV |
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| Protein ID | pfu_aug2.0_603.1_10981.t2 |
| Definition | - |
>pfu_aug2.0_603.1_10981.t2 MRRSLAPSQRCGSSFTSCKKRYSDGDVILSQQIKKSRICVSDDEEDDGQDLRKPLASITNTTSNITNSSHEAFIKKILSK PFKVPIPNYKGSAFASRVLGIRRQGSRQPLHDPCEEGALILYSPPELSAHEQLKIDLEKQPVFVVVDPILTKVLRPHQRE GVKFMYDCVTGQQIEDNYGCIMADEMRQSPDCCPLIDKAVVVSPSSLVKNWYNEISKWLSGKVNAIAIDSGTKKEIDKQL SQFMQQQGRRNPFPILIISYETFRLHAHVMHRGSVGLVICDEGHRLKNSENQTYQALNGLNAKRRILLSGTPIQNDLLEY FSLIHFVNGGILGTAQEFKRRFETPILRGRDADATDEAHKKGQEKLQERPNFCKNIAYRANFSIKNPDLIFDKCQEGSEG YEGTLELFPPGHHTRTVRPELSGKVLVLDCLLALIKAQTSDKVVLVSNYTQTLDLFETLCRQRGYLFVRLDGSMSIKKRA KIVEKFNNPCSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARCWRDGQKKQCYIYRLIATGTIEEKIFQ RQAHKKALSSCVVDKEEDVERHFSLGDLRDLFKLNENTISDTHEKFKCRRCVNNIQVKPPPPDSDCNSDLSQWNHCADRK GLDDILLKGAWESAISFVFHHRSHDEQRKTV |
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