Gene
| Gene Model ID | pfu_aug2.0_604.1_14364 |
|---|---|
| Locus | scaffold604.1 : 1915 ... 8015 : - |
| To GenomeBrowser | scaffold604.1:1915..8015 |
| Genes list of scaffold | scaffold604.1 |
| Synonym | pfu_aug1.0_23271.1_18925 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_604.1_14364.t1 | 1 | 1 | Rab5ip | 41 | 121 | 1.9e-27 | 95.2 | 5.2e-31 | 2.6e-27 | 94.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_604.1_14364.t1 | gi|675862796|ref|XP_009016958.1| | hypothetical protein HELRODRAFT_78375 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_604.1_14364.t1 | gi|676445921|ref|XP_009050910.1| | hypothetical protein LOTGIDRAFT_213830 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_604.1_14364.t1 | gi|410899789|ref|XP_003963379.1| | PREDICTED: uncharacterized protein C20orf24 homolog [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_604.1_14364.t1 | gi|260819048|ref|XP_002604694.1| | hypothetical protein BRAFLDRAFT_127441 [Branchiostoma floridae] | 1.4013e-45 |
| pfu_aug2.0_604.1_14364.t1 | gi|556947628|ref|XP_005986807.1| | PREDICTED: uncharacterized protein C20orf24 homolog isoform X2 [Latimeria chalumnae] | 1.4013e-45 |
Transcript
| Transcript ID | pfu_aug2.0_604.1_14364.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_604.1_14364.t1 atgagcaataaagaacgttctagacaagatgagaagacatcgaatggtgcattgtcgatggcattactggccaaagctgt taaacctgaagctgaatgggaggataaggatgaatttctagatgctgtgtattggttgagacagttaatgggtgtcatac aaggcttgatatggggtctgcttccactgaaaggttttctaggattagttttattttttgtcttcaacttgggtttaata tacttgtactataacacatttcaaaaagtggatgatgaagattatggagggccaacagaaattctcaaagaaggaacaat gacatcatttgccactttcttagtcacatggatcatattatattcatctttacacacagacttatag |
|
Protein
| Protein ID | pfu_aug2.0_604.1_14364.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_604.1_14364.t1 MSNKERSRQDEKTSNGALSMALLAKAVKPEAEWEDKDEFLDAVYWLRQLMGVIQGLIWGLLPLKGFLGLVLFFVFNLGLI YLYYNTFQKVDDEDYGGPTEILKEGTMTSFATFLVTWIILYSSLHTDL |
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