Gene
| Gene Model ID | pfu_aug2.0_604.1_14366 |
|---|---|
| Locus | scaffold604.1 : 16396 ... 41895 : + |
| To GenomeBrowser | scaffold604.1:16396..41895 |
| Genes list of scaffold | scaffold604.1 |
| Synonym | pfu_aug1.0_126180.1_28304 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_604.1_14366.t1 | 3 | 1 | MatE | 38 | 67 | 3.7e-30 | 104.6 | 0.47 | 3500.0 | -2.6 |
| pfu_aug2.0_604.1_14366.t1 | 3 | 2 | MatE | 198 | 355 | 3.7e-30 | 104.6 | 5.0e-34 | 3.7e-30 | 104.6 |
| pfu_aug2.0_604.1_14366.t1 | 3 | 3 | MatE | 543 | 556 | 3.7e-30 | 104.6 | 0.67 | 4900.0 | -3.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_604.1_14366.t1 | gi|635088384|ref|XP_008008808.1| | PREDICTED: multidrug and toxin extrusion protein 1 isoform X4 [Chlorocebus sabaeus] | 0.0 |
| pfu_aug2.0_604.1_14366.t1 | gi|635088386|ref|XP_008008809.1| | PREDICTED: multidrug and toxin extrusion protein 1 isoform X5 [Chlorocebus sabaeus] | 0.0 |
| pfu_aug2.0_604.1_14366.t1 | gi|635088382|ref|XP_008008807.1| | PREDICTED: multidrug and toxin extrusion protein 1 isoform X3 [Chlorocebus sabaeus] | 0.0 |
| pfu_aug2.0_604.1_14366.t1 | gi|635088380|ref|XP_008008806.1| | PREDICTED: multidrug and toxin extrusion protein 1 isoform X2 [Chlorocebus sabaeus] | 0.0 |
| pfu_aug2.0_604.1_14366.t1 | gi|635088378|ref|XP_008008805.1| | PREDICTED: multidrug and toxin extrusion protein 1 isoform X1 [Chlorocebus sabaeus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_604.1_14366.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_604.1_14366.t1 atgtctgatgttataccaaccctaagtcgccttggataccaaatggcattacaatctcctctggtgcagtactggttaga cgcatacaatggaatgcatcctctactagatgttggctgtgcttatggcatcaatacgtttgaggctttggagagagata gtttttttgccttggttctctgcattttacagtcttgttccggatgtcactttacggtgagatggtcttttgtctatgcc atagttatgaatggtgtgaatataccggacgtggtacatcagcgtccctatcggcgaagaagcagtttccaggtggtggt tggtaaagtttatccatatggattcaagagagaagcgaaggcaacactgaggatagcatggcccattgtagagaagctgg caaattcaacacagtgtttgctttctcacttccgtggtcctgccattgcaacttgtttgactcagtacgtcctagctgga cttcactttgccttcatatactgttctggagcacacaaagacacgtggaacggttggtctatggactccctgaatgagtg gaaatcctttactcaactagctgtcccagggttccttatgatagcaatggagtggtgcagctatgagacacttatctttc tgtcaggacttgtgagcaccacggatcttgcagctaataccatcataatgaacattgcaactatattgtacatgggtcct gttggattgtctatagcggcgtgtgtaagagttggtaatcatctgggcgctggtcagcccaacagagcactgactgcctc cagaattgctttatttatggcggtgtgcttggcattgttttatgctggttgtatcttggctcttaaagattttcttccct atcttttcaccaatgaaagagacgtcatcgagctatccaggaaccttatgtatcagttagcactgttcgttgtctgtgat tgcatggctgcgactacaggtggtattctgcgcggaatggggagacaaaaatttggagccattataaacttcataacata ctacttgatggcattacctgtcagtgttcctctactgttggcaactccactacgtgtttatggatcatggtggggtatga tgctaggaaatggaggagcgtttatcgtgttcactgttcgtatcattatagcgaactggtcaaaggagacggaacaggca aaattgcgcacaggggtggatttggaaatcactgtaaatcctatagacagcaccattacgggatcagtgggagaagaggg aaatatcaacccggcatacgatacggaagaacctcaaatatcaaatagttccgatacaaatgaagaagttatggatatga aagatataggccaagataatatcgatggtgcgtctccctcggaaaatacgttgaatattaataaagggcacaaccaatca caaaactcgtcattaagaacgactgatacaggcataatgaacgaccaatcaccatgtcgaaatccagatgttcacaacaa ggatagccaatcggaaggcttgaaagctggaaacactgaattaccaagagccaacagaaggaggtctaccatacagttgt caccaaaggaaatcagacgtacacgtattgtgcaaatcttaataacaatattattctctaccatttttgtgtctggggtg actttgaggatatatttagatatcaaatatggatga |
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Protein
| Protein ID | pfu_aug2.0_604.1_14366.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_604.1_14366.t1 MSDVIPTLSRLGYQMALQSPLVQYWLDAYNGMHPLLDVGCAYGINTFEALERDSFFALVLCILQSCSGCHFTVRWSFVYA IVMNGVNIPDVVHQRPYRRRSSFQVVVGKVYPYGFKREAKATLRIAWPIVEKLANSTQCLLSHFRGPAIATCLTQYVLAG LHFAFIYCSGAHKDTWNGWSMDSLNEWKSFTQLAVPGFLMIAMEWCSYETLIFLSGLVSTTDLAANTIIMNIATILYMGP VGLSIAACVRVGNHLGAGQPNRALTASRIALFMAVCLALFYAGCILALKDFLPYLFTNERDVIELSRNLMYQLALFVVCD CMAATTGGILRGMGRQKFGAIINFITYYLMALPVSVPLLLATPLRVYGSWWGMMLGNGGAFIVFTVRIIIANWSKETEQA KLRTGVDLEITVNPIDSTITGSVGEEGNINPAYDTEEPQISNSSDTNEEVMDMKDIGQDNIDGASPSENTLNINKGHNQS QNSSLRTTDTGIMNDQSPCRNPDVHNKDSQSEGLKAGNTELPRANRRRSTIQLSPKEIRRTRIVQILITILFSTIFVSGV TLRIYLDIKYG |
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