Gene
| Gene Model ID | pfu_aug2.0_604.1_14372 |
|---|---|
| Locus | scaffold604.1 : 113266 ... 125685 : + |
| To GenomeBrowser | scaffold604.1:113266..125685 |
| Genes list of scaffold | scaffold604.1 |
| Synonym | pfu_aug1.0_15746.1_39740 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ww domain-containing oxidoreductase | GO:0001105 GO:0005739 GO:0005794 GO:0005829 GO:0005886 GO:0005902 GO:0008202 GO:0016491 GO:0019899 GO:0030178 GO:0045944 GO:0046983 GO:0048705 GO:0050662 GO:0055114 GO:0071560 GO:0090575 GO:2001238 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_604.1_14372.t1 | 2 | 1 | WW | 14 | 43 | 6.7e-20 | 70.6 | 3.6e-14 | 7.7e-11 | 41.6 |
| pfu_aug2.0_604.1_14372.t1 | 2 | 2 | WW | 55 | 84 | 6.7e-20 | 70.6 | 1.5e-10 | 3.1e-07 | 30.1 |
| pfu_aug2.0_604.1_14372.t1 | 1 | 1 | adh_short | 123 | 256 | 6.8e-17 | 61.8 | 6.4e-20 | 1.3e-16 | 60.9 |
| pfu_aug2.0_604.1_14372.t1 | 2 | 1 | KR | 123 | 212 | 1.9e-08 | 34.1 | 2.4e-11 | 5.0e-08 | 32.8 |
| pfu_aug2.0_604.1_14372.t1 | 2 | 2 | KR | 238 | 259 | 1.9e-08 | 34.1 | 0.64 | 1400.0 | -1.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_604.1_14372.t1 | gi|524894949|ref|XP_005103964.1| | PREDICTED: WW domain-containing oxidoreductase-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_604.1_14372.t1 | gi|676478436|ref|XP_009061427.1| | hypothetical protein LOTGIDRAFT_166117 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_604.1_14372.t1 | gi|297284523|ref|XP_001105944.2| | PREDICTED: WW domain-containing oxidoreductase-like [Macaca mulatta] | 0.0 |
| pfu_aug2.0_604.1_14372.t1 | gi|544518610|ref|XP_005592673.1| | PREDICTED: WW domain-containing oxidoreductase isoform X2 [Macaca fascicularis] | 0.0 |
| pfu_aug2.0_604.1_14372.t1 | gi|731504645|ref|XP_003418142.2| | PREDICTED: WW domain-containing oxidoreductase [Loxodonta africana] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_604.1_14372.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_604.1_14372.t1 atggcgctgcccatgccagacactgacagtgaagatgaacttccagcgggatgggaggagcgagtaacacttgatggaaa ggtttactatgctaatcatgaaaaccaggcaacacaatggcatcatccaactacagggaagaaaaaagaagttaaaggag atttgccatatggatgggaaaagaaagtttctgatgagggactggtgttctatgtggaccatatcaataaaaagacgact tacacagatccacgtctggcctttgctgaggacgtgaagaagaatccatacgactttaaacagaagtttgatggtaacag cacggccatgcaggtagttctagggaaggatctaaccggtacttatgttgtcgtcactggcgcaaactctggaataggtt ttgagacagcacgtaccttagcactgtatggagccaccgttatacttgcatgtcggaatcttgattcagcggagaaaagt cgtcagagtattcttcaggagaggtcgcaggccaaagtggaggtgatgcatcttgatctggcttcattacgtagtgtaaa gatgtttgctgatgagtacagatctaaacaatggcccttacatctcctgatacttaatgctgctgtgtttggcttgccat acacaaggacagaggacgatctagaaatcacattccaagtaaatcacctgtcacatttctacctgaccaagctactgtgg gagacgttagtccagtcacagccggcacgtgttatcgtattaacttcagagtctcacagatttacagacttatcattaga taatctttcggaggagaaactttcaccaacagcgggtaaatactctgatctaaagatgtacaacatcagtaagctactta acgtgctcttctcacttcatcttgagaagctcctcggcatgcagggtgtacacagcatctctgtacatcctggtaactgt atgaacacaagtcttagccgatactggtggctgtacagaatcttcttcttcctggctagtccttttactaagtcaatgca acagggagcagctaccacagtgtactgttctgtagcgtcagagttagagggtgttggtggtatgtattttaacaactgtt gtcgctgtgagccgtccaaggcgggatgtgacgaggatctagcacagaaagtctgggatcttagtgaaaaaatgctcaat gaccgactccagtatagatga |
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Protein
| Protein ID | pfu_aug2.0_604.1_14372.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_604.1_14372.t1 MALPMPDTDSEDELPAGWEERVTLDGKVYYANHENQATQWHHPTTGKKKEVKGDLPYGWEKKVSDEGLVFYVDHINKKTT YTDPRLAFAEDVKKNPYDFKQKFDGNSTAMQVVLGKDLTGTYVVVTGANSGIGFETARTLALYGATVILACRNLDSAEKS RQSILQERSQAKVEVMHLDLASLRSVKMFADEYRSKQWPLHLLILNAAVFGLPYTRTEDDLEITFQVNHLSHFYLTKLLW ETLVQSQPARVIVLTSESHRFTDLSLDNLSEEKLSPTAGKYSDLKMYNISKLLNVLFSLHLEKLLGMQGVHSISVHPGNC MNTSLSRYWWLYRIFFFLASPFTKSMQQGAATTVYCSVASELEGVGGMYFNNCCRCEPSKAGCDEDLAQKVWDLSEKMLN DRLQYR |
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