Gene
| Gene Model ID | pfu_aug2.0_604.1_14379 |
|---|---|
| Locus | scaffold604.1 : 219150 ... 249459 : - |
| To GenomeBrowser | scaffold604.1:219150..249459 |
| Genes list of scaffold | scaffold604.1 |
| Synonym | pfu_aug1.0_1233.1_00661 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_604.1_14379.t1 | 3 | 1 | Laminin_N | 38 | 70 | 8.9e-22 | 77.2 | 9.1e-09 | 2.7e-05 | 23.2 |
| pfu_aug2.0_604.1_14379.t1 | 3 | 2 | Laminin_N | 70 | 134 | 8.9e-22 | 77.2 | 6.1e-20 | 1.8e-16 | 59.8 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 1 | Laminin_EGF | 136 | 195 | 0.0 | 345.4 | 2.7e-10 | 7.9e-07 | 28.9 |
| pfu_aug2.0_604.1_14379.t1 | 3 | 3 | Laminin_N | 166 | 181 | 8.9e-22 | 77.2 | 5.0 | 15000.0 | -5.8 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 2 | Laminin_EGF | 203 | 260 | 0.0 | 345.4 | 1.4e-14 | 4.2e-11 | 42.5 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 3 | Laminin_EGF | 263 | 311 | 0.0 | 345.4 | 1.5e-13 | 4.4e-10 | 39.3 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 4 | Laminin_EGF | 314 | 352 | 0.0 | 345.4 | 5.5e-12 | 1.6e-08 | 34.2 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 5 | Laminin_EGF | 571 | 616 | 0.0 | 345.4 | 4.0e-15 | 1.2e-11 | 44.3 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 6 | Laminin_EGF | 619 | 661 | 0.0 | 345.4 | 5.7e-13 | 1.7e-09 | 37.4 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 7 | Laminin_EGF | 665 | 705 | 0.0 | 345.4 | 4.6e-12 | 1.4e-08 | 34.5 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 8 | Laminin_EGF | 715 | 771 | 0.0 | 345.4 | 4.1e-09 | 1.2e-05 | 25.1 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 9 | Laminin_EGF | 774 | 823 | 0.0 | 345.4 | 3.3e-11 | 9.8e-08 | 31.8 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 10 | Laminin_EGF | 856 | 888 | 0.0 | 345.4 | 3.3e-09 | 9.7e-06 | 25.4 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 11 | Laminin_EGF | 891 | 939 | 0.0 | 345.4 | 7.6e-14 | 2.2e-10 | 40.2 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 12 | Laminin_EGF | 942 | 990 | 0.0 | 345.4 | 9.4e-08 | 0.00028 | 20.7 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 13 | Laminin_EGF | 996 | 1036 | 0.0 | 345.4 | 8.2e-11 | 2.4e-07 | 30.5 |
| pfu_aug2.0_604.1_14379.t1 | 14 | 14 | Laminin_EGF | 1268 | 1282 | 0.0 | 345.4 | 5.0 | 15000.0 | -7.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_604.1_14379.t1 | gi|676468132|ref|XP_009058110.1| | hypothetical protein LOTGIDRAFT_209765 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_604.1_14379.t1 | gi|524911094|ref|XP_005110416.1| | PREDICTED: laminin subunit beta-1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_604.1_14379.t1 | gi|585719045|ref|XP_006825989.1| | PREDICTED: laminin subunit beta-1-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_604.1_14379.t1 | gi|242004311|ref|XP_002423043.1| | Laminin beta-1 chain precursor, putative [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_604.1_14379.t1 | gi|339234671|ref|XP_003378890.1| | laminin subunit beta-1 [Trichinella spiralis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_604.1_14379.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_604.1_14379.t1 atgcaagataaattctaccgtacgggaaggaatagcaatttgacgtttacatttgtatggttagatgcagcctcacagac taggttccagcctcgttgtgaacaaggcagctgttacccagccactggggatctacttatagggcgtgaaacgaacttaa cggcctcgtcaacgtgcgggatgacgcggccagaaccttattgtatagtgattttccgtgtgcttccaccatttattgcc atccgtgatccttattctaaaaaagtccaagatctattgaagcttaccaaccttagagtcaactttacagaattacatac tttaggtgatacgtttttggacaaccgacctgagattaaagagaagtattactatgctatgtatgatatgaccgttagag ggagctgtagttgctatggtcacgcttcccagtgtgtggctgtaccagggtaccaggatggctacagtagcagggctgat atggttcacggccagtgtgtctgtactcacaacaccaaggggcgtaactgtgaattatgtcaggatttctataatgattt accatggagaccagccagacaaaatcaacctaatgcctgtaaaacctgtgattgtgacccgagtggatcgttgaagaaag gtcagtgtgatgaccacacagatgaagcatatggacttgttgccggtagatgtcactgtaaacgatttgtcgagggaaaa cgctgcgatagatgtaaggatggttattggaaccttgacgagaataatccagacggctgtgaaccttgtgattgtaacat tctgggtaccatagccaatgccggatgtgacaaacagacgggcatgtgtctgtgtaaacgttatgtcacaggacagaggt gtgaccaatgttatcctggattctggggtttgggagaggagctgacaggttgccggccatgtgactgtgatgtaggaggg tcagtatcagaggaatgtgacgtcaatgacggcaggtgtacatgtaaacctaacataatcggcaggcagtgtgatgcccc tcgaccagagtactactttgccaaactggattatcttctatatgaagctgagttggccaaaggatacgggaataccagag agtatataagagagccgtatcccgatggttaccagagctggacaggtcctggattcatgcagatttcagagggagattct ctggagtttaccatcaataacatagagtttcccatgaactatgacattgttatacgatatgaccctaggatgccagatat atgggaggatgtacgtgtgtatgttaacagggaccaacaaccagaccagaacggaccatgtgccaaccatagaccatctg atgatgaaaaaactgccgtcatggcacctggttcccggtttaccgaggtacctccatctgcttgtctggagcctggcgtt aattacaccatacgtttacacttccgtcagtataagacagacaaaagaacgcctgaggctaccactctcatagactctat tgtgctggtgccatccacagacagcattccaatcttccaaggtatcggctatcccgattacatgaggaacgaattcatcc gttatagatgtcgtgaatcacagctttcagtataccagccaagtttggtggatttctgccgtaaactgaccttcagtatc tcctcaagcatgatgcacagagctctaccatgtgagtgtgatccaactggatccctaagctcggagtgtgaaccggccgg gggtcagtgtcagtgtaaacctaatgtctacggtagacgctgtgataggtgtgtacctggaacatacaactttggacctg agggatgcaaaccttgtaactgccatgagtatggagcacgggacaatttctgtgatgctgtaacggggcaatgtcagtgt ataaataatgtagccagtcgtacgtgtgagcgatgtgcggacggttactatggattccctcaatgtagaccatgtaactg taacggaaacgctgacgtgtgcgaagatctgactggacgatgtattggttgccgtgacaacacagctggggattattgtg agaggtgttcagcaggttactatggggacccccgtatcaacgtgagaattccatgtgaaccatgtatgtgtcctggagga ccagacagtcctattcagcatgcagatagctgtgctgttgacccgaggtcaaatactgtgacatgtgaatgtaaccttgg ttaccaaggaccaaactgtgatagctgttctgataattattacggcaatcctagagaccagaacggtacatgtataccgt gtctctgtaataacaacatagacctcgatgctagaggaaattgtgacggtacctcaggagaatgtctgaggtgtcagtat aatacagagggattcaactgtgaaaagtgtcggccaggttactatggtgacgcgacaacacaggactgtaaaggtatatt agtcttataccatcttatttgtagtaaacatgtgcttgctctgcagtatccaaatttcacacaagtcagtgttggtatta cnggtacctcaggagaatgtctgaggtgtcagtataatacagagggattcaactgtgaaaagtgtcggccaggttactat ggtgacgcgacaacacaggactgtaaagagtgtatatgttttgattacggtacagaccagagtgcagggcattgtaacag ggagaatggccaatgtaactgcctgcccaatgtagtagggactcgctgtgagaggtgtgccccagggttctggaacatca ccagtggggaggggtgctcagactgtggatgtgatccctcaggctctacaagcattgaatgtaatcagattgatggtcag tgtgattgtatacgatatggtaatggtgagccagcccgagggggcagggactgtgcatcgtgtcctgatctgttctgggg agatcctacggtacaatgtattgcttgtgactgtaacgaccaggggtctgcccagaggcagtgtgacagacggacgggtc agtgtgtctgcctgcctggtatcagcggttataaatgtgacagatgtgatagaggaacaacaggagaactgcctaactgt aagccatgtggagagtgctttgataactgggatagagtcgtcagggatctcagagctcagacacagaacctagtggagga agctttaaaaatcaagtcaactggagtagagaaagcgtttgagaaagaattccgtcagatggaggacaacattcaagaga tcagagacatcttacgtaatgccaacatctctgctgcagatattagggacatagagagtgatattgaaagactaaggaac accatgaacatgagttcctcggagcttgagcgagtagagaatgatctccgtgacaggagggagagtataagacagggtaa caatgatatcagtgcacttaaagtcagtgtcaagagactacaggacaaaatcgctgctctacggagaaacgctacggata ttcagtcccaggatgtggagggtgccttcaaccttacccgagaagctcaactacaatctcgccgggcccagcagattgta gacggaactgacaacattatacaacagtcccagaatattagacaggatgtggacaacatgcttacatcacggaaagacga gtttgatcgtaaattacaggaaaatgataaaaacctgaatgagattgataatcaggtcacagatctaagctcaaagattg ctgaccttaatgaattggtttgtgatgggcgtggtgatccatgtgatgatgtgtgtggtggggcaggatgtggtgtatgt ggtgccgagcagagctgtgataaaggcgcagtcaggaaggcggagaacgccctggatctggctcgtaaggctgaggatat actggcactgaaagagaagaacgcatcaggactctatagtcagattgcagaggaggtactgagcatgaggatttccttga cacctgagcagattatagaacttgctgacgaaatcaacaagacgatcagtggtctacaaaacatagatgacatcataacg gctacgagtgatgacttgtcacgggcacagaaactgaaagagagggcagagaaggcagaagctgaagctatgagcaatct aaagagagcagatggtgtattgaataacctaaaggatgctacaacagcccaggacgatgctcagagagctatagaccaag ctgatacagagattgctgatgctgagcaagatcttgtacagattgagtcagagacggcagctgctggagataaaacacaa cagtccaggaaggttctagagattctacggataaaacttggggaactcaggtcacaatactttgaaaatgagagaaacgt tagaaatgcagagatagccgcagaagaagccgaaagacttgccaatatttcacaagagaaagctaatgaactcacaacta aatattcagcaacatcaactgagcttgattcccgatacaatatgaccagtcaggcacaggcacgtgccaaagctctcaag gaaagagccgacaaaatcgccatagaaaccactgcaaaacttaaaaattaa |
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Protein
| Protein ID | pfu_aug2.0_604.1_14379.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_604.1_14379.t1 MQDKFYRTGRNSNLTFTFVWLDAASQTRFQPRCEQGSCYPATGDLLIGRETNLTASSTCGMTRPEPYCIVIFRVLPPFIA IRDPYSKKVQDLLKLTNLRVNFTELHTLGDTFLDNRPEIKEKYYYAMYDMTVRGSCSCYGHASQCVAVPGYQDGYSSRAD MVHGQCVCTHNTKGRNCELCQDFYNDLPWRPARQNQPNACKTCDCDPSGSLKKGQCDDHTDEAYGLVAGRCHCKRFVEGK RCDRCKDGYWNLDENNPDGCEPCDCNILGTIANAGCDKQTGMCLCKRYVTGQRCDQCYPGFWGLGEELTGCRPCDCDVGG SVSEECDVNDGRCTCKPNIIGRQCDAPRPEYYFAKLDYLLYEAELAKGYGNTREYIREPYPDGYQSWTGPGFMQISEGDS LEFTINNIEFPMNYDIVIRYDPRMPDIWEDVRVYVNRDQQPDQNGPCANHRPSDDEKTAVMAPGSRFTEVPPSACLEPGV NYTIRLHFRQYKTDKRTPEATTLIDSIVLVPSTDSIPIFQGIGYPDYMRNEFIRYRCRESQLSVYQPSLVDFCRKLTFSI SSSMMHRALPCECDPTGSLSSECEPAGGQCQCKPNVYGRRCDRCVPGTYNFGPEGCKPCNCHEYGARDNFCDAVTGQCQC INNVASRTCERCADGYYGFPQCRPCNCNGNADVCEDLTGRCIGCRDNTAGDYCERCSAGYYGDPRINVRIPCEPCMCPGG PDSPIQHADSCAVDPRSNTVTCECNLGYQGPNCDSCSDNYYGNPRDQNGTCIPCLCNNNIDLDARGNCDGTSGECLRCQY NTEGFNCEKCRPGYYGDATTQDCKGILVLYHLICSKHVLALQYPNFTQVSVGIXGTSGECLRCQYNTEGFNCEKCRPGYY GDATTQDCKECICFDYGTDQSAGHCNRENGQCNCLPNVVGTRCERCAPGFWNITSGEGCSDCGCDPSGSTSIECNQIDGQ CDCIRYGNGEPARGGRDCASCPDLFWGDPTVQCIACDCNDQGSAQRQCDRRTGQCVCLPGISGYKCDRCDRGTTGELPNC KPCGECFDNWDRVVRDLRAQTQNLVEEALKIKSTGVEKAFEKEFRQMEDNIQEIRDILRNANISAADIRDIESDIERLRN TMNMSSSELERVENDLRDRRESIRQGNNDISALKVSVKRLQDKIAALRRNATDIQSQDVEGAFNLTREAQLQSRRAQQIV DGTDNIIQQSQNIRQDVDNMLTSRKDEFDRKLQENDKNLNEIDNQVTDLSSKIADLNELVCDGRGDPCDDVCGGAGCGVC GAEQSCDKGAVRKAENALDLARKAEDILALKEKNASGLYSQIAEEVLSMRISLTPEQIIELADEINKTISGLQNIDDIIT ATSDDLSRAQKLKERAEKAEAEAMSNLKRADGVLNNLKDATTAQDDAQRAIDQADTEIADAEQDLVQIESETAAAGDKTQ QSRKVLEILRIKLGELRSQYFENERNVRNAEIAAEEAERLANISQEKANELTTKYSATSTELDSRYNMTSQAQARAKALK ERADKIAIETTAKLKN |
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