Gene
| Gene Model ID | pfu_aug2.0_607.1_24219 |
|---|---|
| Locus | scaffold607.1 : 137851 ... 160765 : - |
| To GenomeBrowser | scaffold607.1:137851..160765 |
| Genes list of scaffold | scaffold607.1 |
| Synonym | pfu_aug1.0_22.1_14733 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_607.1_24219.t1 | 4 | 1 | VCBS | 6 | 39 | 1.2e-06 | 28.7 | 0.0036 | 11.0 | 6.5 |
| pfu_aug2.0_607.1_24219.t1 | 5 | 1 | BBS2_Mid | 22 | 53 | 5.8e-14 | 51.8 | 1.3e-05 | 0.039 | 13.7 |
| pfu_aug2.0_607.1_24219.t1 | 4 | 1 | FG-GAP | 23 | 39 | 5.7e-07 | 29.0 | 0.019 | 55.0 | 3.6 |
| pfu_aug2.0_607.1_24219.t1 | 5 | 2 | BBS2_Mid | 69 | 107 | 5.8e-14 | 51.8 | 0.77 | 2300.0 | -1.7 |
| pfu_aug2.0_607.1_24219.t1 | 4 | 2 | FG-GAP | 127 | 162 | 5.7e-07 | 29.0 | 3.5e-07 | 0.0011 | 18.6 |
| pfu_aug2.0_607.1_24219.t1 | 5 | 3 | BBS2_Mid | 128 | 174 | 5.8e-14 | 51.8 | 2.8e-07 | 0.00083 | 19.1 |
| pfu_aug2.0_607.1_24219.t1 | 4 | 2 | VCBS | 129 | 144 | 1.2e-06 | 28.7 | 6.7e-05 | 0.2 | 12.0 |
| pfu_aug2.0_607.1_24219.t1 | 4 | 3 | FG-GAP | 194 | 205 | 5.7e-07 | 29.0 | 2.1 | 6200.0 | -3.0 |
| pfu_aug2.0_607.1_24219.t1 | 4 | 3 | VCBS | 194 | 212 | 1.2e-06 | 28.7 | 0.77 | 2300.0 | -1.0 |
| pfu_aug2.0_607.1_24219.t1 | 5 | 4 | BBS2_Mid | 279 | 324 | 5.8e-14 | 51.8 | 1.0e-05 | 0.031 | 14.0 |
| pfu_aug2.0_607.1_24219.t1 | 4 | 4 | FG-GAP | 307 | 326 | 5.7e-07 | 29.0 | 0.072 | 210.0 | 1.7 |
| pfu_aug2.0_607.1_24219.t1 | 4 | 4 | VCBS | 307 | 332 | 1.2e-06 | 28.7 | 0.0044 | 13.0 | 6.2 |
| pfu_aug2.0_607.1_24219.t1 | 5 | 5 | BBS2_Mid | 359 | 374 | 5.8e-14 | 51.8 | 2.0 | 6000.0 | -3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_607.1_24219.t1 | gi|676465874|ref|XP_009057385.1| | hypothetical protein LOTGIDRAFT_121560 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_607.1_24219.t1 | gi|585693972|ref|XP_006821728.1| | PREDICTED: integrin-alpha FG-GAP repeat-containing protein 2-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_607.1_24219.t1 | gi|632973728|ref|XP_007903294.1| | PREDICTED: integrin-alpha FG-GAP repeat-containing protein 2 isoform X1 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_607.1_24219.t1 | gi|395538794|ref|XP_003771359.1| | 0.0 | |
| pfu_aug2.0_607.1_24219.t1 | gi|734644814|ref|XP_010751465.1| | PREDICTED: integrin-alpha FG-GAP repeat-containing protein 2 [Larimichthys crocea] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_607.1_24219.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_607.1_24219.t1 atgtggagaacagtttcctttgtagatagaattgagcttgactttacgggaaacttgttcaaacaagcaattgtattagg agatgttgacaatgacaagggccatgagttagtggtaggcagtgccgaaggagacctgtgtatttataaagggaagtcat ccacaccatggagaaaatgcagggatttaggaatgataagttgtgtgggtgtaggtgatatttacagcaggggtaagaat gttctagtgacattgactgcagagggatggtgttatatctttgacatcaagacaggaactgatgaagtgaaggaatctga aattgaaggggacataactctgacatcttcgtttacccaacttctacctgccaatggtaaagttcttcttatctgtgaca tagatggagatggtaaaacagagcttgttgttggatatgcagatagagttgtaagatgcttcaagtggatgccagttcag gatgatggaacagaaagcactgtagataaactgatgcagattggaaagtggcagttaaatggacagataggatccctgac cttgaatctaacaccagagggaatgcctgagttactggtggctcaacctggtggtgcatacgccatccttctcctaaacc agacaaaaaccgacattcctaaacagggatctgagcttgatttggtcagtcttgtggaaactactgaaactgtcaaggag gagagaccaggacatctaagaacaaggaatcccacaatagatacagaaatagtgggaggtatagctaaacagacaagaga gggcaaggacacatactgtgctatatgtacattagatggaactcttcttttggtagaaaacagagaaattctctggtcat tacaagtggatcatcagttattctcattggctaaactcgatgttacaggtaatggtaaggaggaggttgtgtgttgttca tgggacggtcagacttacattgtcaatcataacaaagctgttgtcagatatcagtttgaatcagacgtgtctgcatttac tgcaggtcattttgctgtcgatggaacacagaataacccatcctttgtgtatgctaccttcaacaacaagatctacttat actataatataagtctacctcaggtggaatctacaaaccttatagaggtcatggacaaaagtgataaaactcatgaactc ctggaaaaactcggtttacaagatgcagatcaaagtcagttaagagagttgtacagatggttgttgtatggttggccaag atggtcaaagaagaaccaatga |
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Protein
| Protein ID | pfu_aug2.0_607.1_24219.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_607.1_24219.t1 MWRTVSFVDRIELDFTGNLFKQAIVLGDVDNDKGHELVVGSAEGDLCIYKGKSSTPWRKCRDLGMISCVGVGDIYSRGKN VLVTLTAEGWCYIFDIKTGTDEVKESEIEGDITLTSSFTQLLPANGKVLLICDIDGDGKTELVVGYADRVVRCFKWMPVQ DDGTESTVDKLMQIGKWQLNGQIGSLTLNLTPEGMPELLVAQPGGAYAILLLNQTKTDIPKQGSELDLVSLVETTETVKE ERPGHLRTRNPTIDTEIVGGIAKQTREGKDTYCAICTLDGTLLLVENREILWSLQVDHQLFSLAKLDVTGNGKEEVVCCS WDGQTYIVNHNKAVVRYQFESDVSAFTAGHFAVDGTQNNPSFVYATFNNKIYLYYNISLPQVESTNLIEVMDKSDKTHEL LEKLGLQDADQSQLRELYRWLLYGWPRWSKKNQ |
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