Gene
| Gene Model ID | pfu_aug2.0_609.1_30974 |
|---|---|
| Locus | scaffold609.1 : 92306 ... 102295 : + |
| To GenomeBrowser | scaffold609.1:92306..102295 |
| Genes list of scaffold | scaffold609.1 |
| Synonym | pfu_aug1.0_41167.1_41199 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_609.1_30974.t1 | 1 | 1 | Histone | 45 | 105 | 1.2e-09 | 38.1 | 5.8e-13 | 2.9e-09 | 36.9 |
| pfu_aug2.0_609.1_30974.t1 | 2 | 1 | CBFD_NFYB_HMF | 50 | 105 | 3.5e-19 | 68.6 | 1.3e-22 | 6.5e-19 | 67.7 |
| pfu_aug2.0_609.1_30974.t1 | 2 | 2 | CBFD_NFYB_HMF | 283 | 294 | 3.5e-19 | 68.6 | 0.63 | 3100.0 | -1.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_609.1_30974.t1 | gi|291240148|ref|XP_002739985.1| | PREDICTED: nuclear transcription factor Y subunit gamma-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_609.1_30974.t1 | gi|759073853|ref|XP_011346594.1| | PREDICTED: nuclear transcription factor Y subunit gamma-like [Cerapachys biroi] | 0.0 |
| pfu_aug2.0_609.1_30974.t1 | gi|241171150|ref|XP_002410601.1| | CCAAT-binding factor, subunit C, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_609.1_30974.t1 | gi|260793499|ref|XP_002591749.1| | hypothetical protein BRAFLDRAFT_123513 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_609.1_30974.t1 | gi|197102348|ref|NP_001125820.1| | nuclear transcription factor Y subunit gamma [Pongo abelii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_609.1_30974.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_609.1_30974.t1 atgacagatcccacatatgctccagcttccacctccccagggggaggagtgtctgttagtggagaggcagccatgatgct cggtcagttctggcccaagaccatgaatgacattagagctctcaaacacgatgatttcaagcagcaggaactgcctctcg ctagaataaaaaagataatgaagcttgatgaagatgttaagatgattagtgctgaagcaccagtgctgtttgctaaagct gctgagatatttatcagtgagttgtcactcagagcctggattcatacagaggataacaaaagaaggacactacagcttac attcttagaacaaaccactttgttacagaggaatgacatagctatggccatcactaaatttgaccagtttgatttcctaa tcgatattgtgcctcgtgatgaactaaagccagccagaaaatcagacgatgcatcaaaaggtacctccatgttgccagat cagattcagtattacctacagcttgctcagcaacaagcacagcagcaacaacaagcccagcaacaacaacaacaggccca gcaacaacaagctcaacaacaagcccagcaacaacaggctcaacaacaggcccagcaacaagctgcttcacaaataacgc aggtacagcaacctgctgctgcacagatacaactacccggtggacaaatcatacagcaacctacttaccaagtacagcag caaccacaaccaacagctattcaaggaaatgtacatgtagcccagccccaggtgatacagatccagagttcccaacttcc ccaggctgccacccagcaggctatacaacatgtacagatacagcagccacaagcccaacaagtagcccagcaggtagccc agcctgcagcacaacagacacaagtatatcaacaagtcatcacaccctcaggagaggtccaaaatgttcctattcagcta acaccagcccaattacaagcaatacagatgcagcttaaaggccagcagtccaatcagcctatagttatccagtcctctca gcctaatgtacaaacagtacagacagtgtcacagggggaccaagggtatgctggtcagggggtatatcagatccagcagc ttgccggaggtcaacatggctacatcatacagcagtcagatgctgatcatacagaccaagatggatag |
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Protein
| Protein ID | pfu_aug2.0_609.1_30974.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_609.1_30974.t1 MTDPTYAPASTSPGGGVSVSGEAAMMLGQFWPKTMNDIRALKHDDFKQQELPLARIKKIMKLDEDVKMISAEAPVLFAKA AEIFISELSLRAWIHTEDNKRRTLQLTFLEQTTLLQRNDIAMAITKFDQFDFLIDIVPRDELKPARKSDDASKGTSMLPD QIQYYLQLAQQQAQQQQQAQQQQQQAQQQQAQQQAQQQQAQQQAQQQAASQITQVQQPAAAQIQLPGGQIIQQPTYQVQQ QPQPTAIQGNVHVAQPQVIQIQSSQLPQAATQQAIQHVQIQQPQAQQVAQQVAQPAAQQTQVYQQVITPSGEVQNVPIQL TPAQLQAIQMQLKGQQSNQPIVIQSSQPNVQTVQTVSQGDQGYAGQGVYQIQQLAGGQHGYIIQQSDADHTDQDG |
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