Gene
| Gene Model ID | pfu_aug2.0_609.1_30980 |
|---|---|
| Locus | scaffold609.1 : 251157 ... 273439 : - |
| To GenomeBrowser | scaffold609.1:251157..273439 |
| Genes list of scaffold | scaffold609.1 |
| Synonym | pfu_aug1.0_9719.1_24623 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_609.1_30980.t1 | 2 | 1 | ABC_tran | 78 | 227 | 4.4e-24 | 85.3 | 3.1e-26 | 3.5e-23 | 82.4 |
| pfu_aug2.0_609.1_30980.t1 | 4 | 1 | AAA_21 | 89 | 111 | 2.4e-08 | 34.3 | 5.5e-06 | 0.0063 | 16.5 |
| pfu_aug2.0_609.1_30980.t1 | 4 | 2 | AAA_21 | 163 | 255 | 2.4e-08 | 34.3 | 4.6e-06 | 0.0053 | 16.7 |
| pfu_aug2.0_609.1_30980.t1 | 3 | 1 | ABC2_membrane | 255 | 281 | 2.70002e-41 | 141.0 | 3.5 | 4000.0 | -3.3 |
| pfu_aug2.0_609.1_30980.t1 | 4 | 3 | AAA_21 | 306 | 342 | 2.4e-08 | 34.3 | 1.3 | 1500.0 | -1.1 |
| pfu_aug2.0_609.1_30980.t1 | 2 | 2 | ABC_tran | 309 | 372 | 4.4e-24 | 85.3 | 0.59 | 680.0 | 0.5 |
| pfu_aug2.0_609.1_30980.t1 | 3 | 2 | ABC2_membrane | 387 | 598 | 2.70002e-41 | 141.0 | 2.38221e-44 | 2.70002e-41 | 141.0 |
| pfu_aug2.0_609.1_30980.t1 | 2 | 1 | ABC2_membrane_3 | 407 | 427 | 5.1e-08 | 32.3 | 0.34 | 380.0 | -0.2 |
| pfu_aug2.0_609.1_30980.t1 | 2 | 2 | ABC2_membrane_3 | 440 | 651 | 5.1e-08 | 32.3 | 4.5e-11 | 5.1e-08 | 32.3 |
| pfu_aug2.0_609.1_30980.t1 | 4 | 4 | AAA_21 | 539 | 608 | 2.4e-08 | 34.3 | 0.36 | 410.0 | 0.7 |
| pfu_aug2.0_609.1_30980.t1 | 3 | 3 | ABC2_membrane | 636 | 650 | 2.70002e-41 | 141.0 | 0.63 | 720.0 | -0.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_609.1_30980.t1 | gi|548538612|ref|XP_005752693.1| | PREDICTED: ATP-binding cassette sub-family G member 2-like [Pundamilia nyererei] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_609.1_30980.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_609.1_30980.t1 atgcaggacggagcagctgtaaataacgggaaatacacgatgtcagatggcggcaattctgacagcttcaaaacgaaaga aagtcatgttctagagatgtatggaaaacagaaggggttgaagggggatgaccacgtaaaaggctccacaatatctgctc atggtattaactacagtgtgacagtcaatgataaaccatgctgctgtggaacaaagaaagaaaagccaatcctcaaaaac atcgattgcatcttcaaaccaggaatgaatgccatcttaggtccaactggaagtggaaaatcatcattacttgatgtgtt agcaggcagaaaagatccagcaggtttgaaagggacaatacttattgacggggcaccacctcctgataatttcaaatgca tggttggatatgttgtgcaggatgatgttgtcatgggaacccttagtgtgagggagaatttccatttctctgctgcactc agactgtccagtgtcgtaagtgctgaggaaaggaatgaaagagtagaaaatgtcatcaaagaacttggtcttactcattg tgcagacacaaaggtaggaacagagtttatcagaggagtatcagggggagagagaaagaggaccaacattggtatggagt tgattatctcccctcccgtcctatttcttgatgaaccaacaacaggactggacgccaatacggccaactctgtaatgttg ttactaaaacgattggccatgaggggaaggaacattatcttttccatacaccaacctcgtttttccatataccgactgtt cgataccctaatgatgctatccctaggagaaactgtgtaccatggtccaacggaagaatctctggaattttttaaaacat taggatatgtaattgaggagcataacaaccctcctgacttctttttggatgttataaatggagacttcaatgtaacagca gagactatggacatagagaagacaaatacgtcagatgaagaggaaatccatgacaaactgatccagacatacagatcatc tatctggaataaaagacttcaggcagaagttgatccaatcagagagcagtatgagaggaatgtagagatgcgtactgtag taagaatgccaccaatagagtacaaaacatctttccttagacagtttggtattctgagtaagaggacagccaaggacctg ctgaggaatccacaaactactgttatgcagttagtggtgatgctcatatttggtatcattgtgggaacgatatattttga tgtagacagtgactgtaaatctggaatccaaaacagagttggagtgttctttttcatcatcatgaaccaggtatttggga acttgtcagcagtggaactcttcattaaagaacgggctattttcatccatgaaaatgtcagtggtttctacagagtctcc gcctacttcctctcaaagattgtttgtgatgtcattccaatgagattacttcccgttttagtattttctgtcgttacata cttcatgatcggatttgtggtagcagcaaacaaatttttcctctacgtcttgaccctcttcctggtgtccactgcagcat caggaatagccttcttcattagtgcttctgtcagaatatacgccatagctaatctccttatagctctcagctatgtcttt atgatggttttcagtggactgcttattaacatagattctattgctgattggttgaaatggctggaatggttcagtatctt tagatattcactcaatgcactgacaatcactgaactgaaagatatgtcattttataatgcatcaggagtattatgcgaca cgggtaacgagtaccttgcagatcaaggtattccatacgccactgactgggatctatggtacaatgtgatggctcttatc atcttctctgttctcttcatgatcctggcctatgtacagctaagaaggatcaagaaactcaagtag |
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Protein
| Protein ID | pfu_aug2.0_609.1_30980.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_609.1_30980.t1 MQDGAAVNNGKYTMSDGGNSDSFKTKESHVLEMYGKQKGLKGDDHVKGSTISAHGINYSVTVNDKPCCCGTKKEKPILKN IDCIFKPGMNAILGPTGSGKSSLLDVLAGRKDPAGLKGTILIDGAPPPDNFKCMVGYVVQDDVVMGTLSVRENFHFSAAL RLSSVVSAEERNERVENVIKELGLTHCADTKVGTEFIRGVSGGERKRTNIGMELIISPPVLFLDEPTTGLDANTANSVML LLKRLAMRGRNIIFSIHQPRFSIYRLFDTLMMLSLGETVYHGPTEESLEFFKTLGYVIEEHNNPPDFFLDVINGDFNVTA ETMDIEKTNTSDEEEIHDKLIQTYRSSIWNKRLQAEVDPIREQYERNVEMRTVVRMPPIEYKTSFLRQFGILSKRTAKDL LRNPQTTVMQLVVMLIFGIIVGTIYFDVDSDCKSGIQNRVGVFFFIIMNQVFGNLSAVELFIKERAIFIHENVSGFYRVS AYFLSKIVCDVIPMRLLPVLVFSVVTYFMIGFVVAANKFFLYVLTLFLVSTAASGIAFFISASVRIYAIANLLIALSYVF MMVFSGLLINIDSIADWLKWLEWFSIFRYSLNALTITELKDMSFYNASGVLCDTGNEYLADQGIPYATDWDLWYNVMALI IFSVLFMILAYVQLRRIKKLK |
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