Gene
| Gene Model ID | pfu_aug2.0_61.1_03527 |
|---|---|
| Locus | scaffold61.1 : 21616 ... 36545 : + |
| To GenomeBrowser | scaffold61.1:21616..36545 |
| Genes list of scaffold | scaffold61.1 |
| Synonym | pfu_aug1.0_1790.1_08124 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_61.1_03527.t1 | 1 | 1 | MIF4G | 820 | 927 | 1.9e-21 | 76.4 | 2.2e-25 | 3.2e-21 | 75.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_61.1_03527.t1 | gi|556980087|ref|XP_005996801.1| | PREDICTED: eukaryotic translation initiation factor 4 gamma 1 isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_61.1_03527.t1 | gi|556980093|ref|XP_005996803.1| | PREDICTED: eukaryotic translation initiation factor 4 gamma 1 isoform X3 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_61.1_03527.t1 | gi|556980096|ref|XP_005996804.1| | PREDICTED: eukaryotic translation initiation factor 4 gamma 1 isoform X4 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_61.1_03527.t1 | gi|301611338|ref|XP_002935190.1| | PREDICTED: eukaryotic translation initiation factor 4 gamma 1 isoform X1 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_61.1_03527.t1 | gi|512840874|ref|XP_004914457.1| | PREDICTED: eukaryotic translation initiation factor 4 gamma 1 isoform X2 [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_61.1_03527.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_61.1_03527.t1 atgaggcattcaccttgctcaggcttgctgtcatttgccagtgtatttgtcaaatgccacctgcagggcctgactttagt gagtgagccagagagacatccttctagtacaagcaccagattactacactatcctcccttttcaaatactgggttttcct gccaccctcctgcccacaagctcttttcatctgtgggatatacgttttgcgccattgaaatcatgacactgccaccagct gatttagtaaaaggagctgatgatcaacaggcacagttttcttatcaatacataaatcagccgttcagtgttccacctcc cactcagcagacgcctacacagggccatgaattaagaggtcagatacagcctcagtacatacagggacaaaacttggtcc cacaacaagcaaacatgaattatcaacatactataaggacacctaaccaaacacagatgcatcagagtaacaggatgtcc acaccacaatacatgccgggaatgccgagtgctaacgcccccacacagtatatgaatcaaactactgtacctaactactg gaacactgccactatcatgtatggccctcaacagaacaccaatatgaccccacagaacacccaaccggcaccgccacaga aaagggaacgacacattctaaaaatagaagatcctgtcacacatcgtgatatcacaagcgaagttctaaaaaataaccag ccaggatcgtcaaggtcaacgccacctagtggaccaggatctgggtcacgcagcacacctatagagtcagcatcagcacc tcctatgagcgatgtagcagcagtgttcgctgctcaggtctctgctacactaaatcctagtaaacagcaacaacccccac cccagtctgcacccccacatcaaagcgcacctcccacagccccacccgacgtcaccatggcagccaaaccacaaatggcc gacacaatgcagccatcatcagaggaaactccagctgtgaatatagcgccccctgttgatatatctcagccccctcctag tatacttgaatcagactccgtgtcgagcaactctcaaagtgaaactgtttcagaagaaaaaacagaatctttaccacaag acactactagttctttaggtgctgtggaaggggtgtcacatacccaaagtctttcaaataatgaagtgctctcatcatca attagtcaaccaacagaaatatctgcccctgatacagagaaattggactctacgagcagtgaatttgtgcccgctagtgt tagtgtatctgaagaaattacagcgtcagaggaagttcccaagcaacaggagcaagtggaagaacaagtgtgcgaagaaa gtgtttcgaacgctgaaattaacacaaggactagtgaagaaagtccagaaactgtagttgtggagacaagtgttgacaat tcatcatcagacaaaccagtagaatctagcgttgtggaggaagctaccattatagaaacacagacagaagacgaaccaac aatggaagtcacagttataaataaaagagcaantgaagaaagtgtttcgaacgctgaaattaacacaaggactagtgaag aaagtccagaaactgtatttgtggagacaagtgtcgacaattcatcatcagacaaaccagtagaatctagcgttgtggag gaagctaccattatagaaacacagacagaagacgaaccaacaatggaagtcacagctaaggaagttaaaaagacaaaaaa gaaggctaaggatttcaacaagaaggagttatcaggaacagacatggatgcctttgttgatgtagccagtgttccagatg tagtgccagccgttgaaccagagcctgtcgtagaagataaacctgtgccaaaggtagagatacgtatagaagacgaggcc aaaccagaaacgacagaaaacatccaggaaaacggactgtcagatgaggagggctccgatgactcgaaacccgtcatgga gctcaaatataaatataaagaagaccagtggagtccattgaatcctgaaggtaaacgtcagtatgaccgtgagttcatcc tccagctacagtacgcttcagaatccacagtaaaaccaacaggactgccagacttgccagatattatacttgataagccc cattcaatgaacacaagttcatcacgttccagttttagttttccagacatgtcctccagatcggcgggtctgtttgactt cactcctggctacgtcaagggatctccaaggcctggccagtcgataccaaagaggttgagtggagctaagggccgagggg gtagcagtcagaagattataaacctgggctctctatcacaagatatacagctacataaagccgactcggcatggaaacct gccaggaaatcggagaagtctgtggatgaggaggacaagaaaactgaggaattatacaagaaagctcgtggtgtgctgaa caaattaacacctcagaaattccagactttagtacagcaaatggcagaactaaagatagatacagaaaagagattaaaag gagttactgacttagtgtttgagaaggctataagtgaaccaggtttcagtgttgcttatgccaacatgtgtagatatctg actcagattaaggtgccctcagaaactaaagagggagaatatgtgaatttccgtgcaatattattaacaagatgtcaaaa ggaattcgaaaaagataaggattctgaagctgagcttgaacagaagagaaaagtaatcagggaattaaaggaaaaaattg ctatgaatttctacatgtcaagatacatgtaa |
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Protein
| Protein ID | pfu_aug2.0_61.1_03527.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_61.1_03527.t1 MRHSPCSGLLSFASVFVKCHLQGLTLVSEPERHPSSTSTRLLHYPPFSNTGFSCHPPAHKLFSSVGYTFCAIEIMTLPPA DLVKGADDQQAQFSYQYINQPFSVPPPTQQTPTQGHELRGQIQPQYIQGQNLVPQQANMNYQHTIRTPNQTQMHQSNRMS TPQYMPGMPSANAPTQYMNQTTVPNYWNTATIMYGPQQNTNMTPQNTQPAPPQKRERHILKIEDPVTHRDITSEVLKNNQ PGSSRSTPPSGPGSGSRSTPIESASAPPMSDVAAVFAAQVSATLNPSKQQQPPPQSAPPHQSAPPTAPPDVTMAAKPQMA DTMQPSSEETPAVNIAPPVDISQPPPSILESDSVSSNSQSETVSEEKTESLPQDTTSSLGAVEGVSHTQSLSNNEVLSSS ISQPTEISAPDTEKLDSTSSEFVPASVSVSEEITASEEVPKQQEQVEEQVCEESVSNAEINTRTSEESPETVVVETSVDN SSSDKPVESSVVEEATIIETQTEDEPTMEVTVINKRAXEESVSNAEINTRTSEESPETVFVETSVDNSSSDKPVESSVVE EATIIETQTEDEPTMEVTAKEVKKTKKKAKDFNKKELSGTDMDAFVDVASVPDVVPAVEPEPVVEDKPVPKVEIRIEDEA KPETTENIQENGLSDEEGSDDSKPVMELKYKYKEDQWSPLNPEGKRQYDREFILQLQYASESTVKPTGLPDLPDIILDKP HSMNTSSSRSSFSFPDMSSRSAGLFDFTPGYVKGSPRPGQSIPKRLSGAKGRGGSSQKIINLGSLSQDIQLHKADSAWKP ARKSEKSVDEEDKKTEELYKKARGVLNKLTPQKFQTLVQQMAELKIDTEKRLKGVTDLVFEKAISEPGFSVAYANMCRYL TQIKVPSETKEGEYVNFRAILLTRCQKEFEKDKDSEAELEQKRKVIRELKEKIAMNFYMSRYM |
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