Gene
| Gene Model ID | pfu_aug2.0_61.1_03539 |
|---|---|
| Locus | scaffold61.1 : 363589 ... 390303 : + |
| To GenomeBrowser | scaffold61.1:363589..390303 |
| Genes list of scaffold | scaffold61.1 |
| Synonym | pfu_aug1.0_2228.1_66241 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_61.1_03539.t1 | 1 | 1 | VWA | 361 | 533 | 6.3e-33 | 113.9 | 3.7e-36 | 1.1e-32 | 113.1 |
| pfu_aug2.0_61.1_03539.t1 | 1 | 1 | VWA_2 | 361 | 520 | 8.5e-13 | 48.7 | 4.5e-16 | 1.3e-12 | 48.1 |
| pfu_aug2.0_61.1_03539.t1 | 1 | 1 | VWA_3 | 361 | 504 | 8.3e-06 | 25.5 | 5.0e-09 | 1.5e-05 | 24.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_61.1_03539.t1 | gi|524873339|ref|XP_005093417.1| | PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_61.1_03539.t1 | gi|541989781|ref|XP_005445670.1| | PREDICTED: putative tRNA pseudouridine synthase Pus10 [Falco cherrug] | 0.0 |
| pfu_aug2.0_61.1_03539.t1 | gi|558158148|ref|XP_006122219.1| | PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Pelodiscus sinensis] | 0.0 |
| pfu_aug2.0_61.1_03539.t1 | gi|558158143|ref|XP_006122218.1| | PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X1 [Pelodiscus sinensis] | 0.0 |
| pfu_aug2.0_61.1_03539.t1 | gi|675882890|ref|XP_009026947.1| | hypothetical protein HELRODRAFT_179923 [Helobdella robusta] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_61.1_03539.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_61.1_03539.t1 atggatgcgcccataaacttcaaaactcagatgaagctgtattcatcagacgaaactgagataaaatctataggagcaga actggttgattcaggatgctgtccacattgtatattacgttacctaggtcagatggatcccagtgtgtacagacaatcct ttcaggaagtcagatctacagtaagctggttgctttacggtgacagagatgcagatttatactctaaacaaccctgtcca gcttgtctgggtatactacagtacttccttgacgaagactttattgataggattttacagacagtgagatcaagtgacta tgagtataggtcctttatttgctccataacaactcctgtatctgtgttagttagggagcactgtttactgattcaattaa gagaaaaatttgatgccatatatggtcttaaggtagtcacagatttaccatctataaaagatgtatggaaatggaagatt ggtcctacactgtcaaaacaccttgatgttacttttgatacgaaaagttcttttgatatagccatgatatttgagtatcc ggactcggacaaggagtgtgcatttttatcagattactttccagaattatttaggaaaaggaaaagtaataaaatgggca tagatgatagattctccaggctgaacgtaaccaaagctttgtcagagatacctgatgactttgttataaggaaaaagaaa gttcctccatgtattcctactcagaaatgtcgatgtgcagaaatcaaatgttcctatgactcagttttcttagcaggcag gtataacaagtatagtcgtacactaagtcagactccatggtttgtagacggtacaaggaaaagcagctcttcagtggagg aagaaatctgtaacctgctaaaagacatgttcagatatgacgaacacagattttctgcgtcagggagggaagatgtagac gtcagaatgctgggaacagatataggcaagccaaatgatgtggatataggcaaaccaaatgacttagatatgggtaaacc aaatgatgtgggtataggcaaaccaaatgatgtagatatagacatcgttatcgtgatagacacgtcacagagcgtggagc aggccgacttggtggacgccatagatttcgtgtataacgtcactcagtggctgggtgttggcagtagtgatattctcgta tccatagtaacctactctacagatgtcacggaacaattcccgctaagttcctacaatgacaaaacgtcactgctgacggc tatcaaagcactttcttctattaacacaggtggtgccacctatacatttgatgctctaacgtacgtaaaatcgacgtcat ttctggccgtcaatggcggtcgttcatcggcgatgaaagccgtcttggttatgacagacgggaaatcgtcaaattatccc ctgacaaaatcagaggccgatgaattacgcaagaatttgtctgctgaggtcttcgccattggcattggtgctgccgccgg atcaacctccaacattgaaattcccgccatcgccagtgacccagatgattactacacatattacgttaaatcttatgaag tattatgcagtcttataccatctatagttccaaaattagatcctgacgccgtggcacaaggtgttgccaactgtccctcc gatgaaactacgacgacagccccggttaccagttctagtggacttgacgtgagcatgttggtgggaatagtggtagcagc ggtcattattgctgtactattgaccattgtgaccgctactttagcacagcaaaggaaattaccaaaagtgttcactatgg aacaacagaccataaacgccgtgaagcagtaccaggaagctcccatgggggaggagaagaacgtgtttgatgcttcacag ttagatgtcgtaccaagtaccgggccccgggcagatcagttctctgtgttcataccaacgcccaccgcctcggcttatct cagagatgctgcacttctgtag |
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Protein
| Protein ID | pfu_aug2.0_61.1_03539.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_61.1_03539.t1 MDAPINFKTQMKLYSSDETEIKSIGAELVDSGCCPHCILRYLGQMDPSVYRQSFQEVRSTVSWLLYGDRDADLYSKQPCP ACLGILQYFLDEDFIDRILQTVRSSDYEYRSFICSITTPVSVLVREHCLLIQLREKFDAIYGLKVVTDLPSIKDVWKWKI GPTLSKHLDVTFDTKSSFDIAMIFEYPDSDKECAFLSDYFPELFRKRKSNKMGIDDRFSRLNVTKALSEIPDDFVIRKKK VPPCIPTQKCRCAEIKCSYDSVFLAGRYNKYSRTLSQTPWFVDGTRKSSSSVEEEICNLLKDMFRYDEHRFSASGREDVD VRMLGTDIGKPNDVDIGKPNDLDMGKPNDVGIGKPNDVDIDIVIVIDTSQSVEQADLVDAIDFVYNVTQWLGVGSSDILV SIVTYSTDVTEQFPLSSYNDKTSLLTAIKALSSINTGGATYTFDALTYVKSTSFLAVNGGRSSAMKAVLVMTDGKSSNYP LTKSEADELRKNLSAEVFAIGIGAAAGSTSNIEIPAIASDPDDYYTYYVKSYEVLCSLIPSIVPKLDPDAVAQGVANCPS DETTTTAPVTSSSGLDVSMLVGIVVAAVIIAVLLTIVTATLAQQRKLPKVFTMEQQTINAVKQYQEAPMGEEKNVFDASQ LDVVPSTGPRADQFSVFIPTPTASAYLRDAALL |
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