Gene
| Gene Model ID | pfu_aug2.0_61.1_03544 |
|---|---|
| Locus | scaffold61.1 : 519946 ... 535075 : + |
| To GenomeBrowser | scaffold61.1:519946..535075 |
| Genes list of scaffold | scaffold61.1 |
| Synonym | pfu_aug1.0_7124.1_45584 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| visual system homeobox 2 | GO:0003677 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_61.1_03544.t1 | 1 | 1 | Homeobox | 173 | 229 | 3.1e-23 | 81.1 | 1.3e-26 | 6.4e-23 | 80.1 |
| pfu_aug2.0_61.1_03544.t1 | 1 | 1 | OAR | 320 | 338 | 5.1e-06 | 25.8 | 3.8e-09 | 1.9e-05 | 24.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_61.1_03544.t1 | gi|529448544|ref|XP_005243967.1| | PREDICTED: visual system homeobox 2 [Falco peregrinus] | 0.0 |
| pfu_aug2.0_61.1_03544.t1 | gi|543250497|ref|XP_005417658.1| | PREDICTED: visual system homeobox 2 [Geospiza fortis] | 0.0 |
| pfu_aug2.0_61.1_03544.t1 | gi|699703130|ref|XP_009907714.1| | PREDICTED: visual system homeobox 2 [Picoides pubescens] | 0.0 |
| pfu_aug2.0_61.1_03544.t1 | gi|527261607|ref|XP_005149048.1| | PREDICTED: visual system homeobox 2 [Melopsittacus undulatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_61.1_03544.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_61.1_03544.t1 atgatgaattttgcgcatcacccttcttacgcggcagcggctttgggaatttcaggaactctgggtttgcccacagcaaa tttcccgccaaattccctcccctcggtgtcggaggggcagcgtgagcgttccctaccccaaaggacaccattcgctatcc aagaattattaggacttggtaatcaggaaagtgaaaggacacgtgtgacgcaaagtgacgctctgatcagtgcctccccg tacttgacgccatccctggctggttcccttacagctccccgggggtcggggatcaaagacgtttcggtgacatctagtct gtcctactccacgtggcgatcatcctttatcaacgccctgaattcaacagcgcactctatgttcaacatcggtggtcctc agaactcggtgcttggcaaaaatgacataaaatctggtttggatcaaacgttcccagacaagtctggtatagaaaacgtg gaatcgtcgtctataggaaagaaaaagaagaagaaacgaagacacaggacaatattcaccagctatcagctggaagagct agagaaggcgtttaaggacgctcattacccggatgtatatgccagggaggttttggcactgaagaccggacttcccgagg atcgcatacaggtatggtttcaaaatcgacgtgcgaaatggcgaaaaaccgaaaagacctggggaagaagtagtataatg gctgaatatggtctgtatggagcaatggttcgacattcacttccgcttccggaaacaatattaaagagtgcaaaggacgg cattatggagtcgtgtgcaccttggctgcttagttttccgatttcaacctcgacaggcatgcataaaaaatccctggagg ccgcggagaagctaaaggacgttaaagaggacgatggcgcatcggatacgtcatcaccggattctaaaaataaagaagac agacgctcggaaagtattgccacactacgtgcaaaggcacaagagcacagtgcaaaatatgtatccgaagattcagacag agacaattcggaaaacacaagttatatgactcactctgtaatgaattcgtaccacagtcgcttcgaagagccacgaaaag aagatgaatatagtcagagtcaagaggaaatcgatgttgtttaa |
|
Protein
| Protein ID | pfu_aug2.0_61.1_03544.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_61.1_03544.t1 MMNFAHHPSYAAAALGISGTLGLPTANFPPNSLPSVSEGQRERSLPQRTPFAIQELLGLGNQESERTRVTQSDALISASP YLTPSLAGSLTAPRGSGIKDVSVTSSLSYSTWRSSFINALNSTAHSMFNIGGPQNSVLGKNDIKSGLDQTFPDKSGIENV ESSSIGKKKKKKRRHRTIFTSYQLEELEKAFKDAHYPDVYAREVLALKTGLPEDRIQVWFQNRRAKWRKTEKTWGRSSIM AEYGLYGAMVRHSLPLPETILKSAKDGIMESCAPWLLSFPISTSTGMHKKSLEAAEKLKDVKEDDGASDTSSPDSKNKED RRSESIATLRAKAQEHSAKYVSEDSDRDNSENTSYMTHSVMNSYHSRFEEPRKEDEYSQSQEEIDVV |
|