Gene
| Gene Model ID | pfu_aug2.0_611.1_04398 |
|---|---|
| Locus | scaffold611.1 : 88449 ... 103985 : - |
| To GenomeBrowser | scaffold611.1:88449..103985 |
| Genes list of scaffold | scaffold611.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low quality protein: hemicentin-1 | GO:0005576 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_611.1_04398.t1 | 4 | 1 | TSP_1 | 20 | 70 | 7.5e-38 | 128.4 | 7.2e-11 | 5.3e-07 | 29.6 |
| pfu_aug2.0_611.1_04398.t1 | 4 | 2 | TSP_1 | 77 | 127 | 7.5e-38 | 128.4 | 6.1e-16 | 4.5e-12 | 45.8 |
| pfu_aug2.0_611.1_04398.t1 | 4 | 3 | TSP_1 | 134 | 184 | 7.5e-38 | 128.4 | 1.7e-14 | 1.3e-10 | 41.2 |
| pfu_aug2.0_611.1_04398.t1 | 4 | 4 | TSP_1 | 192 | 241 | 7.5e-38 | 128.4 | 4.1e-11 | 3.0e-07 | 30.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_611.1_04398.t1 | gi|657574735|ref|XP_008291087.1| | PREDICTED: hemicentin-1 [Stegastes partitus] | 0.0 |
| pfu_aug2.0_611.1_04398.t1 | gi|734610888|ref|XP_010732821.1| | PREDICTED: LOW QUALITY PROTEIN: hemicentin-1 [Larimichthys crocea] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_611.1_04398.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_611.1_04398.t1 atgaataagataagaaaaaagagtagaacgaggaggctcaaggtacatggggaatggtcgacatggcaacgatggagtag atgtaacatgaaatgcggaaaaggacttgtcacacgtgttagagagtgtaataacccgaaaccatcaaatggtggtcggc agtgtaacggagtcacatcacaacaaaaacgctgtcaaattaaaccatgctcggtaaatggacaatggtcaacatggcta tcatggagtagttgttcagaaacatgcggaagaggaatcaaaacacgtcaaagaacatgtaacaacccaaaaccttccaa tggaggtcaggaatgcgtaggggacgcttcacaacttaaacgctgtagaattatgccatgtccagtaaatggaaaatggt cagcctggctaccatggagtagttgttcagaaacatgcggaagaggactcaaaacacgtcaaagaacatgtaacaaccca aaaccttccaatggcggtctgaaatgcgtagggtacgcttcacaacataaacgctgtagaattatgccgtgtccagtgaa tggtaattggggaaggtggaagacaaccacttcatgttctgctacatgtggaggcggagcactggtacagaaaagagctt gtaataaaccttccccacagtatggtggccagcaatgtcatggaaatagtataagaacaatacagtgttacttgacacct tgtccatcgatagcttcaatgtctaaaacaaccgtacaaacaaaatcatcaaaagcttccgtaccatttcaatcatcaac gcccagcaaacaaacacagtcaccaaaatctacagtatacacacagtcgacaaagctccgaccaacaactacagctacgc aacagacacaactaacaaccgctttcatccaagctagcaaaatgagaactacttttccaaaatttgcatggcagacaata aagataacaaagaggagtcacagatag |
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Protein
| Protein ID | pfu_aug2.0_611.1_04398.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_611.1_04398.t1 MNKIRKKSRTRRLKVHGEWSTWQRWSRCNMKCGKGLVTRVRECNNPKPSNGGRQCNGVTSQQKRCQIKPCSVNGQWSTWL SWSSCSETCGRGIKTRQRTCNNPKPSNGGQECVGDASQLKRCRIMPCPVNGKWSAWLPWSSCSETCGRGLKTRQRTCNNP KPSNGGLKCVGYASQHKRCRIMPCPVNGNWGRWKTTTSCSATCGGGALVQKRACNKPSPQYGGQQCHGNSIRTIQCYLTP CPSIASMSKTTVQTKSSKASVPFQSSTPSKQTQSPKSTVYTQSTKLRPTTTATQQTQLTTAFIQASKMRTTFPKFAWQTI KITKRSHR |
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