Gene
| Gene Model ID | pfu_aug2.0_611.1_04402 |
|---|---|
| Locus | scaffold611.1 : 239137 ... 254657 : - |
| To GenomeBrowser | scaffold611.1:239137..254657 |
| Genes list of scaffold | scaffold611.1 |
| Synonym | pfu_aug1.0_14475.1_61357 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| malate dehydrogenase 1b-like | GO:0008152 GO:0016491 GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_611.1_04402.t1 | 2 | 1 | Ldh_1_C | 161 | 210 | 5.2e-12 | 45.8 | 0.21 | 1000.0 | -0.7 |
| pfu_aug2.0_611.1_04402.t1 | 2 | 2 | Ldh_1_C | 321 | 490 | 5.2e-12 | 45.8 | 7.4e-15 | 3.6e-11 | 43.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_611.1_04402.t1 | gi|676471669|ref|XP_009059249.1| | hypothetical protein LOTGIDRAFT_123956 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_611.1_04402.t1 | gi|291241545|ref|XP_002740667.1| | PREDICTED: putative malate dehydrogenase 1B-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_611.1_04402.t1 | gi|524911606|ref|XP_005110664.1| | PREDICTED: putative malate dehydrogenase 1B-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_611.1_04402.t1 | gi|260835748|ref|XP_002612869.1| | hypothetical protein BRAFLDRAFT_129976 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_611.1_04402.t1 | gi|390358902|ref|XP_793712.3| | PREDICTED: putative malate dehydrogenase 1B [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_611.1_04402.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_611.1_04402.t1 atggcgaaagttgtgattgcaggaaaatctgactgtccttattatgctcgggcagaacttcttggtgacaagctcgccct caacctgccagacttcaaacttcacaagatcgttatacaaccagaggaatgggattcattagttacatgcaattatcaca attttgattttgaaggatatttttattttacaggaaaatctgactgtccttattatgctcgggcagaacttcttggtgac aagctcgcccttaacctgccggacttcaaacttcacaagattgttatacaaccggaggaatgggataaatggctgaagga cacatgtaacgctagaggctgggagcacaagaagtctccgttggtgtggagagagttagtggaccgtggagggaagggag ttctgattggtggagctaacgagttccaggaatactcacatggttactatggtatacagtcggctcatatcagctcagat atgcttaaaatggcgtccgagaataaactatacaaggaggcagaaaccaaggaagaaatggagtataaagcacaaagtaa cccgctgtatgtctgtattacaaatgcttctagtgccgcatgttactccatgattaactctatagctaagggtgatgtat ttggacacaatacggaagtagctctcagactgtatgataacgagaacaagatggaggaactaaggggtgtacagatggag gctatggacctagcaaatggaccactcaggatcgtagaggttacctctgatgtcaaaaaagcctttactaattgcgaggc tattgttctcttggatgaaattgaaatgaaagacggggaaagtagagaaaattatgtaaaacgagaagtagaacattttg tggagtatgcgaaaataatgaacgatgtagcgaagaaaaatgtgaagaactttgtgggtatgtcaagattgctagagaac catgccaagtcagtggtggctgacagactcggtgtaaactctagcggagtcgttgatttgatcatttggggcaatgtgaa tggcggaaattacattgacatttcaaattgtcgtgtccatggctatgatggcgccatctggggaccaccatttttctcac tgccagcaaaggagatgatctgggacaagaaatggttagatactgaattcattgatttgatcagaaatcggaaagcaaag gtggaagaattgttaggtcacagagccgcaatgtcacaaggggctattgtagcatcacaactagagcagtggtggaatgg atcaccggagggacagatgttctcattggctgtctgctcagatggttggtttggtgtgccagaaggattggtatgttcac taccagtgaagctgaatcctaaaggtgaatggagtgtagtagaagacatcagcctgtcagaagaggtcaaggacaagatc aaagaggcagtcaaggatgttgaagctgacaaacatattattttcccaccacccaaaccaccaacacctcccccatctga ggtcaaggtcaccattgtggaccccaaggatgagaagaaagattcagagaagaaagattcttcagaatctgaatctgagc agaagttggcaaccatcgtggaggaaagggagaaaactctagattctgtaatatcggaatcatcacctacagagaccaag acggaagaatggacaatcacaacaagaggatcagttgggacaatgaataaaaatgagttaaagaagatcatgactataat ctcaacagcactcacaatagaacaccaaattgagcatcgacggaccccgagcaagctagagatgggaccaggtgcccggg aggagtaa |
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Protein
| Protein ID | pfu_aug2.0_611.1_04402.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_611.1_04402.t1 MAKVVIAGKSDCPYYARAELLGDKLALNLPDFKLHKIVIQPEEWDSLVTCNYHNFDFEGYFYFTGKSDCPYYARAELLGD KLALNLPDFKLHKIVIQPEEWDKWLKDTCNARGWEHKKSPLVWRELVDRGGKGVLIGGANEFQEYSHGYYGIQSAHISSD MLKMASENKLYKEAETKEEMEYKAQSNPLYVCITNASSAACYSMINSIAKGDVFGHNTEVALRLYDNENKMEELRGVQME AMDLANGPLRIVEVTSDVKKAFTNCEAIVLLDEIEMKDGESRENYVKREVEHFVEYAKIMNDVAKKNVKNFVGMSRLLEN HAKSVVADRLGVNSSGVVDLIIWGNVNGGNYIDISNCRVHGYDGAIWGPPFFSLPAKEMIWDKKWLDTEFIDLIRNRKAK VEELLGHRAAMSQGAIVASQLEQWWNGSPEGQMFSLAVCSDGWFGVPEGLVCSLPVKLNPKGEWSVVEDISLSEEVKDKI KEAVKDVEADKHIIFPPPKPPTPPPSEVKVTIVDPKDEKKDSEKKDSSESESEQKLATIVEEREKTLDSVISESSPTETK TEEWTITTRGSVGTMNKNELKKIMTIISTALTIEHQIEHRRTPSKLEMGPGAREE |
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