Gene
| Gene Model ID | pfu_aug2.0_612.1_07724 |
|---|---|
| Locus | scaffold612.1 : 170926 ... 191662 : + |
| To GenomeBrowser | scaffold612.1:170926..191662 |
| Genes list of scaffold | scaffold612.1 |
| Synonym | pfu_aug1.0_376.1_07497 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_612.1_07724.t1 | 5 | 1 | Sushi | 19 | 32 | 7.1e-19 | 67.9 | 3.6 | 8900.0 | -2.9 |
| pfu_aug2.0_612.1_07724.t1 | 5 | 2 | Sushi | 85 | 136 | 7.1e-19 | 67.9 | 0.00015 | 0.38 | 11.1 |
| pfu_aug2.0_612.1_07724.t1 | 5 | 3 | Sushi | 144 | 193 | 7.1e-19 | 67.9 | 2.2e-07 | 0.00054 | 20.2 |
| pfu_aug2.0_612.1_07724.t1 | 5 | 4 | Sushi | 201 | 251 | 7.1e-19 | 67.9 | 1.6e-10 | 3.9e-07 | 30.2 |
| pfu_aug2.0_612.1_07724.t1 | 5 | 5 | Sushi | 260 | 310 | 7.1e-19 | 67.9 | 1.1e-08 | 2.6e-05 | 24.4 |
| pfu_aug2.0_612.1_07724.t1 | 1 | 1 | MAM | 335 | 478 | 9.4e-27 | 93.7 | 7.7e-30 | 1.9e-26 | 92.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_612.1_07724.t1 | gi|260827048|ref|XP_002608477.1| | hypothetical protein BRAFLDRAFT_231902 [Branchiostoma floridae] | 7.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_612.1_07724.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_612.1_07724.t1 atgtgtataactgcatgtctagaggatagagactgtgtgtccgtgaaccatcataggaattctttaagttgtcagctcct aacatgggattcttcaacattaagtgagtttgttttaagggattactgtacgcactacaccgcttcggctttgcatttga acacgagtgggaggtgtgacgatacagactgtaatgaacaccacacgtgtataactattctgagtaatgaaaagtactgt attagaacagcttgttctgatccagtagttccgtacggtatatttgcgaatggttctaacattgtgagcggtgtcaggga ggctacttgtaatacgtactatgagtttaacggaggtgcatctatggacgttacaacatgtggtgccggaggacattggg ataaggcattgatgtgtcaattaaaagaatgccctgaaccctctgcaccacaatatggtacggtgctgagtggtaatagt tcgatagggtcttccagagaaatagaatgcacaactggatatgcaaaacttggtgccgaatctgggattatgtgtcagca tgatcagacgtggacaacatggacgggcacctgttccacgtgtagcaatccaagtgctatttccagtgcttacgttggat ccggtacagtcaccgtggggtcccagcgaacttattattgtaatacgggttatcagagtaacggatattctgctacaatc acatgtcagagcgatgctacatggacgtcgacatcttttggatgtaatctcaaagattgtggatcaccacctagtgtatc tctggcatcagcctcttactcggctacgacatacgggtcttccatcatctacacttgtaactatggttacattggtaatg gcggaagtttttcgatattctgccagtcatcggctgtctggtcggctgttcagttttcttgcatgaggccttcgacagca acttttgacttcgagggttttgacacctatagcatggaagactatggtgcatcgtattcatggactaggcaatcaggtgc aacccccagtgtagacacaggaccgagttcagcctattataatagctactacatgtatctggaaacctcaagtcctgtcg ctgctggaggagtagctaagatggccaccgatatctactttagtggtgacgtaaattgtgtggactttaagtaccatatg tatggagcaaacatggggtcactgagtgttctatatgtcctggaggggtcaagctccgaataccagatatggtacaccag tgggaataaagggaatgcatggaacagtggtagggcaaacataaacctatcacagaatttcaagttgatattccaagcga caaagggaggttcttcttcaagcgactaccacagtgacattgctgttgaccttatacaactaaagaccagctgctga |
|
Protein
| Protein ID | pfu_aug2.0_612.1_07724.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_612.1_07724.t1 MCITACLEDRDCVSVNHHRNSLSCQLLTWDSSTLSEFVLRDYCTHYTASALHLNTSGRCDDTDCNEHHTCITILSNEKYC IRTACSDPVVPYGIFANGSNIVSGVREATCNTYYEFNGGASMDVTTCGAGGHWDKALMCQLKECPEPSAPQYGTVLSGNS SIGSSREIECTTGYAKLGAESGIMCQHDQTWTTWTGTCSTCSNPSAISSAYVGSGTVTVGSQRTYYCNTGYQSNGYSATI TCQSDATWTSTSFGCNLKDCGSPPSVSLASASYSATTYGSSIIYTCNYGYIGNGGSFSIFCQSSAVWSAVQFSCMRPSTA TFDFEGFDTYSMEDYGASYSWTRQSGATPSVDTGPSSAYYNSYYMYLETSSPVAAGGVAKMATDIYFSGDVNCVDFKYHM YGANMGSLSVLYVLEGSSSEYQIWYTSGNKGNAWNSGRANINLSQNFKLIFQATKGGSSSSDYHSDIAVDLIQLKTSC |
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