Gene
| Gene Model ID | pfu_aug2.0_614.1_14385 |
|---|---|
| Locus | scaffold614.1 : 134088 ... 146105 : - |
| To GenomeBrowser | scaffold614.1:134088..146105 |
| Genes list of scaffold | scaffold614.1 |
| Synonym | pfu_aug1.0_22437.1_69486 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein farnesyltransferase subunit beta-like | GO:0003824 GO:0009987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_614.1_14385.t1 | 4 | 1 | Prenyltrans_2 | 67 | 104 | 1.9e-23 | 83.0 | 4.1e-06 | 0.02 | 15.2 |
| pfu_aug2.0_614.1_14385.t1 | 3 | 1 | Prenyltrans_1 | 68 | 137 | 1.9e-06 | 27.8 | 5.6e-06 | 0.028 | 14.4 |
| pfu_aug2.0_614.1_14385.t1 | 3 | 2 | Prenyltrans_1 | 88 | 194 | 1.9e-06 | 27.8 | 1.9e-07 | 0.00093 | 19.1 |
| pfu_aug2.0_614.1_14385.t1 | 5 | 1 | Prenyltrans | 89 | 127 | 0.0 | 169.8 | 9.5e-14 | 4.7e-10 | 38.8 |
| pfu_aug2.0_614.1_14385.t1 | 4 | 2 | Prenyltrans_2 | 91 | 203 | 1.9e-23 | 83.0 | 1.1e-21 | 5.5e-18 | 65.4 |
| pfu_aug2.0_614.1_14385.t1 | 5 | 2 | Prenyltrans | 135 | 177 | 0.0 | 169.8 | 2.1e-10 | 1.0e-06 | 28.1 |
| pfu_aug2.0_614.1_14385.t1 | 3 | 3 | Prenyltrans_1 | 139 | 205 | 1.9e-06 | 27.8 | 0.00031 | 1.5 | 8.8 |
| pfu_aug2.0_614.1_14385.t1 | 5 | 3 | Prenyltrans | 190 | 226 | 0.0 | 169.8 | 1.4e-16 | 6.9e-13 | 47.9 |
| pfu_aug2.0_614.1_14385.t1 | 4 | 3 | Prenyltrans_2 | 211 | 252 | 1.9e-23 | 83.0 | 0.00091 | 4.5 | 7.7 |
| pfu_aug2.0_614.1_14385.t1 | 5 | 4 | Prenyltrans | 232 | 274 | 0.0 | 169.8 | 2.3e-11 | 1.1e-07 | 31.2 |
| pfu_aug2.0_614.1_14385.t1 | 5 | 5 | Prenyltrans | 294 | 336 | 0.0 | 169.8 | 4.3e-12 | 2.1e-08 | 33.5 |
| pfu_aug2.0_614.1_14385.t1 | 4 | 4 | Prenyltrans_2 | 306 | 335 | 1.9e-23 | 83.0 | 0.0058 | 29.0 | 5.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_614.1_14385.t1 | gi|291231044|ref|XP_002735484.1| | PREDICTED: protein farnesyltransferase subunit beta-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_614.1_14385.t1 | gi|676491987|ref|XP_009065774.1| | hypothetical protein LOTGIDRAFT_222587 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_614.1_14385.t1 | gi|573889608|ref|XP_006632568.1| | PREDICTED: protein farnesyltransferase subunit beta-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_614.1_14385.t1 | gi|742197714|ref|XP_010892519.1| | PREDICTED: protein farnesyltransferase subunit beta-like isoform X1 [Esox lucius] | 0.0 |
| pfu_aug2.0_614.1_14385.t1 | gi|524899874|ref|XP_005106363.1| | PREDICTED: protein farnesyltransferase subunit beta-like [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_614.1_14385.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_614.1_14385.t1 atgtcctgtttgtttcagaatgaagttgaggaatctgtaggcaaatatttcacgtattttaggaaccgctgccatgcaga gggagaattatttgaattgcccaaattgaatagaaaaatccataccacattcctgaagaggggattaattcatctatcta agtcgtatgagtgtctggatgcaagtagaccctggttatgttactggatattacatgcattagagctcctagatgaacat gtatcagacgatctatcttcacaagttgcacaattccttggcaagtgtcaatgtcccgatggaggatttgctggaggacc tggacaggctgctcatttggcaccaacttatgctgcggtcaacgctttatgtatccttggtacagaggaagcatacaatg tgattcatagggaaaggttgtactcattcctaaaaagaatgaagagtgcagatggagcattcaaaatgcatgaaggagga gaagtggatatcaggggagcttactgtgctgctagtgctgcccgtttaacaaatatcataacagatgaattatttgatgg aacacctgaatggattaccagctgtcaaacatatgaaggaggttttggtgggtgtccaggtatggaagcccatgggggat attcattttgtggtttagctgccctgaccattatgggacatgccaaactctgtaatctggagaatcttttaaggtggaca gcgaatcgtcaaatgcgttttgagggaggtttccaaggcaggacaaacaaacttgtagatggatgttactcgttttggca gggtggtgcattccctcttatacatatggtcttgtctcaagagcatgattcctgcctgagtgctgatagatggatgtttg actataaagctctacaggaatatatattggtttgttgtcagtatccaggaggtgggctcatagacaaacctggaaagcct agtgatttttaccacacatgttactgtctgagtggattatcagtagcccagcattttggtggtggtaatatagcccactt acatgtcctaggtcatcctgataatgagttgaaacctacccatccagtttttaacatttgtattgatgctgtggtccatg caaacttctacttcaacaagttaccattacctacagactttgcaaaataa |
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Protein
| Protein ID | pfu_aug2.0_614.1_14385.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_614.1_14385.t1 MSCLFQNEVEESVGKYFTYFRNRCHAEGELFELPKLNRKIHTTFLKRGLIHLSKSYECLDASRPWLCYWILHALELLDEH VSDDLSSQVAQFLGKCQCPDGGFAGGPGQAAHLAPTYAAVNALCILGTEEAYNVIHRERLYSFLKRMKSADGAFKMHEGG EVDIRGAYCAASAARLTNIITDELFDGTPEWITSCQTYEGGFGGCPGMEAHGGYSFCGLAALTIMGHAKLCNLENLLRWT ANRQMRFEGGFQGRTNKLVDGCYSFWQGGAFPLIHMVLSQEHDSCLSADRWMFDYKALQEYILVCCQYPGGGLIDKPGKP SDFYHTCYCLSGLSVAQHFGGGNIAHLHVLGHPDNELKPTHPVFNICIDAVVHANFYFNKLPLPTDFAK |
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