Gene
| Gene Model ID | pfu_aug2.0_6189.1_32867 |
|---|---|
| Locus | scaffold6189.1 : 1 ... 5915 : - |
| To GenomeBrowser | scaffold6189.1:1..5915 |
| Genes list of scaffold | scaffold6189.1 |
| Synonym | pfu_aug1.0_2418.1_58901 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_6189.1_32867.t1 | 2 | 1 | Nup54 | 212 | 228 | 1.4e-15 | 57.2 | 0.29 | 4300.0 | -2.8 |
| pfu_aug2.0_6189.1_32867.t1 | 2 | 2 | Nup54 | 408 | 459 | 1.4e-15 | 57.2 | 9.3e-20 | 1.4e-15 | 57.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_6189.1_32867.t1 | gi|524914683|ref|XP_005112153.1| | PREDICTED: nuclear pore complex protein Nup54-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_6189.1_32867.t1 | gi|524914681|ref|XP_005112152.1| | PREDICTED: nuclear pore complex protein Nup54-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_6189.1_32867.t1 | gi|291223056|ref|XP_002731520.1| | PREDICTED: nucleoporin p54-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_6189.1_32867.t1 | gi|597778339|ref|XP_007252806.1| | PREDICTED: nuclear pore complex protein Nup54-like isoform X1 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_6189.1_32867.t1 | gi|241122556|ref|XP_002403575.1| | nucleoporin P54, putative [Ixodes scapularis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_6189.1_32867.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_6189.1_32867.t1 atgaagaagggcgatatacgcattgtacaaagtgaaagtaggatttcgtctcattcattcaaacaagaaattgggattct tcctatattgattattctgtcatgtcctttacatttggagctcccacagcaagctcaacgtcggctccaacctttggttt tggaaccacaacaacctcagcgtcgacaggatttggtggatttggcactcaacccaaaacaacagcatcaacaggatttg gatttacaggtaaaaaatggatttggtggatttggcactcaacccaaaacaacagcatcaacaggatttggatttacagg ttttggagggtttggcactcagcctaaaaccaccgcagcaggaacaacagggcttggatttggtacaggaacaagtacag ggaccacgggatttggatttggagcaggaacaagtggcaccacaacaggtacatttggatttggtggtaccgctacatct actgcccccacgggatttggatttggtggtgggaccaccggattgggaactggaacatcaacaggattttctgggtttgg gacaacaggtggtactacaggatttgggttagggacagggggcactactcttggaggatttggacttggagctcagcaac agcagcaacaacaacaacaagccagctccaccctcgaaaacctcggcacggccgttactctaccacagatatatggtgat gagagggacgctatcatagccaagtggaaccagttactggcttactggggtactggtaaaggttactatagtcagaatgg agcggtagatttcacctcagaaaatccatactgcagatttaaggctgttggatacacaaggctgcctagaactaagaacg aggatggccttgtgtctatatttatcaacaagaaggaaagtgacgtgacgaccaatcaacaacaaatacaagacacgctc ttcaagatcatggggagtagaccacagttctcagtgtgtgtggagggcatcaagagacttccagatgacaagacagaact ggtaatatatatcctggaaagacccgctacaggcccagcacggagggtacccgccagcgacacgtttaacttcctcaatc agccggcacagcaaggccagctaaaaacacagctagatgtacagagtgtgatacctaagacgggactcactgatcaggca ctgaaggaatacctggatacacctcctgctggaattcatccattgctatggcaacaagcaaaggtagataatccagatcc cagcaaccttatacccattcctatgataggatttaaagcccttcatgaaaggatgaagcaccaagaacaacagaccaagg cacatcaacaaagactggat |
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Protein
| Protein ID | pfu_aug2.0_6189.1_32867.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_6189.1_32867.t1 MKKGDIRIVQSESRISSHSFKQEIGILPILIILSCPLHLELPQQAQRRLQPLVLEPQQPQRRQDLVDLALNPKQQHQQDL DLQVKNGFGGFGTQPKTTASTGFGFTGFGGFGTQPKTTAAGTTGLGFGTGTSTGTTGFGFGAGTSGTTTGTFGFGGTATS TAPTGFGFGGGTTGLGTGTSTGFSGFGTTGGTTGFGLGTGGTTLGGFGLGAQQQQQQQQQASSTLENLGTAVTLPQIYGD ERDAIIAKWNQLLAYWGTGKGYYSQNGAVDFTSENPYCRFKAVGYTRLPRTKNEDGLVSIFINKKESDVTTNQQQIQDTL FKIMGSRPQFSVCVEGIKRLPDDKTELVIYILERPATGPARRVPASDTFNFLNQPAQQGQLKTQLDVQSVIPKTGLTDQA LKEYLDTPPAGIHPLLWQQAKVDNPDPSNLIPIPMIGFKALHERMKHQEQQTKAHQQRLD |
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