Gene
| Gene Model ID | pfu_aug2.0_62.1_06848 |
|---|---|
| Locus | scaffold62.1 : 233970 ... 238813 : + |
| To GenomeBrowser | scaffold62.1:233970..238813 |
| Genes list of scaffold | scaffold62.1 |
| Synonym | pfu_aug1.0_215.1_36399 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_62.1_06848.t1 | 1 | 1 | Lectin_C | 181 | 291 | 9.4e-11 | 42.2 | 9.3e-15 | 1.4e-10 | 41.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_62.1_06848.t1 | gi|532048668|ref|XP_005367109.1| | PREDICTED: CD209 antigen-like protein C-like [Microtus ochrogaster] | 4.0e-12 |
| pfu_aug2.0_62.1_06848.t1 | gi|672026438|ref|XP_008756738.1| | PREDICTED: CD209 antigen-like protein C isoform X1 [Rattus norvegicus] | 8.0e-12 |
| pfu_aug2.0_62.1_06848.t1 | gi|672072359|ref|XP_008767273.1| | PREDICTED: CD209 antigen-like protein C isoform X2 [Rattus norvegicus] | 9.0e-12 |
| pfu_aug2.0_62.1_06848.t1 | gi|392332486|ref|XP_003752596.1| | PREDICTED: CD209 antigen-like protein E [Rattus norvegicus] | 3.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_62.1_06848.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_62.1_06848.t1 atgattcttacctcactactgctctcttgtgtcgcggtttacgtcacaggtgaaccgggaactgcaaattatcctacatg gacacgtatgggtatttatcctggtccaggtggtgggtcatcaggtggacatggaggtggatttgttagtggaggtggat ttggtggagttgtaggtggaaagaagggagatatttatcctcctaccaagaaaggtgttgtctatcctaagaagggcggt atgatgtttggaggtggtcatgggggtggatttgtcagtggaggtggatttggtggaggcagctttggcaagaaaggtgt tgtctatcccaaaaaaggtgttatccctggtggaaaatatcctcatggaaacgttcaaaaagtcggaggacatggctact tccctgatgttgcccctggacttaaaggatacggaaagggacattactacaagcaagttgccaatgttggtccgatggct gttagttgtccttatggttggcagtactatcacggatcttgttattacttcagcagagaaaggcttacttggtggcatgc ctatgcaaaatgtggctttatgggaggatatctggcaatggttaactacgctcatgaaaactcctacttaaaactcatgt gcaagaagatgaaatttgatgatggtgcttggtttggtctaaatgatatcttattccccaaaactcatacatggtactgg ggatttggtaagaaagggtgtaaatggtttgactggtttggaaagggaccaaaatacaggggaacagactacaattgtgt ttgctttaaggaagattaccactaccaatgggccgtcagtagctgccacacaaaactgtattacatctgcgaactcaatc ccgtaagctctacataa |
|
Protein
| Protein ID | pfu_aug2.0_62.1_06848.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_62.1_06848.t1 MILTSLLLSCVAVYVTGEPGTANYPTWTRMGIYPGPGGGSSGGHGGGFVSGGGFGGVVGGKKGDIYPPTKKGVVYPKKGG MMFGGGHGGGFVSGGGFGGGSFGKKGVVYPKKGVIPGGKYPHGNVQKVGGHGYFPDVAPGLKGYGKGHYYKQVANVGPMA VSCPYGWQYYHGSCYYFSRERLTWWHAYAKCGFMGGYLAMVNYAHENSYLKLMCKKMKFDDGAWFGLNDILFPKTHTWYW GFGKKGCKWFDWFGKGPKYRGTDYNCVCFKEDYHYQWAVSSCHTKLYYICELNPVSST |
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