Gene
| Gene Model ID | pfu_aug2.0_62.1_06850 |
|---|---|
| Locus | scaffold62.1 : 267211 ... 277269 : - |
| To GenomeBrowser | scaffold62.1:267211..277269 |
| Genes list of scaffold | scaffold62.1 |
| Synonym | pfu_aug1.0_62407.1_34691 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| integrase core domain protein | GO:0005488 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_62.1_06850.t1 | 1 | 1 | rve | 405 | 453 | 1.5e-10 | 41.2 | 5.7e-14 | 2.8e-10 | 40.3 |
| pfu_aug2.0_62.1_06850.t1 | 1 | 1 | BTB_2 | 578 | 671 | 5.3e-14 | 52.1 | 2.4e-17 | 1.2e-13 | 51.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_62.1_06850.t1 | gi|554807271|ref|XP_005914558.1| | PREDICTED: uncharacterized protein LOC102294500 [Haplochromis burtoni] | 4.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_62.1_06850.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_62.1_06850.t1 atggtgaaaaattcgcatacagaagcggcccaatctctacatttggcagggagcttgacagatagtgcgagggcactcct taatgaccttgacccccataaattcgaagattacgacaaattagtagaagcgctcacccaccgctacggtaatgtgaatc gagccgcagtcttcaaatcacagttacaaactaggcttaaaaggaaagatgagagcattcccgagttagcgcaagccata gtcaaacttgctaggaaagcctatccaaaagctagtcccgaaatgatcgatgttttggcgattgatcattttatagatgc ttttccacagtctgacctaagaataaaactgaaagaaaaagatcctaaatctataatggaggccgaaaaacttgccgtta cattagaagccttaagtctggctgataaacagcgcgagaaaaatgtacgggtgatcgaagttgccacaagcgaaatttca aattataatgacccgacgcttggagatcaagttagagaactgatgttggaagtaagagatatgaagcgttggaactactc taggggtcgttaccgacctaacgaccgtcgggtggtcgacctacgatggaaaatggccagaatgtccggccacctaaccc ggcagctcaacatcagggaaacaggcaacagtcgagtcaggggccacggctcgaccataaatttgaggcccggatccact caaaattaccttattcgtgacgacattgagggtttcttcatcaaaactacaataaacaaaatgcaaattgcgatgttgat agacacagggttgagctgtagggtggttatcaaggaagatatagaggtaccaccagagaccgaggtaatggtcgaaggat ccattattgacaaacatagtataggatgctctggactaataagtatgtcacctgaattggtacagagaaatggtttaatg gttgcaagagcattggttaaaacatctgaaaatgacaatcttgttttaaggatcgtaaacttcaatagaaaagaagccaa ggacagcaaaccactccctctcattgacgacacccttgatgcattgtatgggtcggcatggtttagcactatggacttaa aaagtggtttctggcaagtaggtctgtcacaaaaagaccgaccgaaatcagtatttcaacatgtggcggggagctctggc agtttacagtcatgccttaggttacattctgaccagggtactaactttgagtctcagctaatgaaaaaagtttgtgcttt gttgggcattgaaaagacaagaacaacaccgcttagaccacaatctgacggcctagtagagcgtgcaaaccgtactctag ctataatgctctcgaaatatgtaaccgaacaacagaatgatttggatgaacatctgcctttggtactcatggcatatcgc tcttccgtacaaagtaccacaggtcagtcaccgaataagatgatgttcggccgtgaggaccctagcatcgaccttcagat ggcaaatggagcagaatctcttcttccaactctggatggcctcgtttcatcagtgcctaccgttgttgcaacagcatcca ttgaggtgccagaatccgaaattccagtagagctaaggaagtttgcaactgtagtggaatctgcatctgaaaggttgacg atagaggacagggacaagttgactaatcttagaaaatgcgcagagagtaagatcattttaaagataggaggaaagtactt tcatactagcatgaacaccctaaaaggagtacgtgacagtctctttaccaaaatcttccacgaggactcgccatactttc gagtatttaaagacagaccaacgttcttcatagacagagactttaagcattttgacgtaattctaaattttctgagaaat ggaggatgtttgccattggaggtgttacccagagatctaagattgctgaatgagatgagggttgaggctgaattttacga gctggcaggattggtgaccaccattgatgccaggcttgctcgattgtttgacgttgcccgtttctga |
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Protein
| Protein ID | pfu_aug2.0_62.1_06850.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_62.1_06850.t1 MVKNSHTEAAQSLHLAGSLTDSARALLNDLDPHKFEDYDKLVEALTHRYGNVNRAAVFKSQLQTRLKRKDESIPELAQAI VKLARKAYPKASPEMIDVLAIDHFIDAFPQSDLRIKLKEKDPKSIMEAEKLAVTLEALSLADKQREKNVRVIEVATSEIS NYNDPTLGDQVRELMLEVRDMKRWNYSRGRYRPNDRRVVDLRWKMARMSGHLTRQLNIRETGNSRVRGHGSTINLRPGST QNYLIRDDIEGFFIKTTINKMQIAMLIDTGLSCRVVIKEDIEVPPETEVMVEGSIIDKHSIGCSGLISMSPELVQRNGLM VARALVKTSENDNLVLRIVNFNRKEAKDSKPLPLIDDTLDALYGSAWFSTMDLKSGFWQVGLSQKDRPKSVFQHVAGSSG SLQSCLRLHSDQGTNFESQLMKKVCALLGIEKTRTTPLRPQSDGLVERANRTLAIMLSKYVTEQQNDLDEHLPLVLMAYR SSVQSTTGQSPNKMMFGREDPSIDLQMANGAESLLPTLDGLVSSVPTVVATASIEVPESEIPVELRKFATVVESASERLT IEDRDKLTNLRKCAESKIILKIGGKYFHTSMNTLKGVRDSLFTKIFHEDSPYFRVFKDRPTFFIDRDFKHFDVILNFLRN GGCLPLEVLPRDLRLLNEMRVEAEFYELAGLVTTIDARLARLFDVARF |
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