Gene
| Gene Model ID | pfu_aug2.0_62.1_06853 |
|---|---|
| Locus | scaffold62.1 : 347473 ... 354396 : + |
| To GenomeBrowser | scaffold62.1:347473..354396 |
| Genes list of scaffold | scaffold62.1 |
| Synonym | pfu_aug1.0_10096.1_02867 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mediator of rna polymerase ii transcription subunit 4 | GO:0001104 GO:0006357 GO:0016592 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_62.1_06853.t1 | 1 | 1 | PHD | 20 | 59 | 3.6e-07 | 29.7 | 4.0e-10 | 7.4e-07 | 28.7 |
| pfu_aug2.0_62.1_06853.t1 | 2 | 1 | Exo_endo_phos_2 | 232 | 308 | 5.7e-06 | 25.9 | 1.5e-08 | 2.7e-05 | 23.7 |
| pfu_aug2.0_62.1_06853.t1 | 1 | 1 | Med4 | 349 | 480 | 4.3e-35 | 120.8 | 4.1e-38 | 7.6e-35 | 120.0 |
| pfu_aug2.0_62.1_06853.t1 | 2 | 2 | Exo_endo_phos_2 | 429 | 455 | 5.7e-06 | 25.9 | 1.7 | 3200.0 | -2.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_62.1_06853.t1 | gi|676425665|ref|XP_009044377.1| | hypothetical protein LOTGIDRAFT_109428 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_62.1_06853.t1 | gi|524899470|ref|XP_005106166.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 4-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_62.1_06853.t1 | gi|746816579|ref|NP_001291176.1| | mediator complex subunit 4 [Esox lucius] | 0.0 |
| pfu_aug2.0_62.1_06853.t1 | gi|557016713|ref|XP_006008784.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 4 isoform X2 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_62.1_06853.t1 | gi|213511791|ref|NP_001134632.1| | mediator of RNA polymerase II transcription subunit 4 [Salmo salar] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_62.1_06853.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_62.1_06853.t1 atgaaactgcagactattgtggtcaatgtaaccaagaagtcctttaattgggcccataaaggggtttgctgtgatcaatg ccaaacttggtaccacattgattgtcaaaatatctacaacgacacatacgaaatattgggtaactcgaacgtatcgtggt attgtctgaactgtggaacccaaaatctaagtaaaagcctgtcagacatgttaacattagtctcactccaaaatagtttc tctgttctagccaatcatgacagtgaaaatcctttagcttcctcgacaccaatgaaaacagtcccacttagtactaaaag tttgcaacatcataaacaggtaaaacctggtaggaagaaaaatcattctaatgcacaaaacatcaaagtgcttaacataa attgtcgatcaatacagaacaaaaagggtgagttctatcatatgattgatacccagcaacctgacatcattgttgggaca gagtcgtggttaacacctgacatacaaaattctgaaatatttccaaatgacctaaactactctgtacaccgaagagacag gagcacaaacaaaacaggtggtggagtattcgtccttgttaaaaacacccttgtctcaaccagaatatcagatgcagaga cagattgtgaaatcttatgggttaaggtagaactcaaagtagcaaaaccgttactgataggggcatactacaaaccaact gaaaacgatgaagtaagtattgttgacttatctaagtcattagatttactaagaggtaaaggtaacacaacatggctatt gggcgatttcaacatgccccatatcaactgggtaaacaatagtccatcaccacaatgtaagctccgaacactgtactata cctttctagatacactggatgaccatgaacttcaccaaatggtcgatatacccacaagaganctctgtacaccgaagaga caggagcacaaacaaaacagagagcttttcgagaccttagcgctacccaagtcccagcaaagaccagatgctatagattc tatgaagctaatagaacttgtcacccacaaagacaaagaaatcaaagaaaccttaaaactagctgctgaacaagcagaga ttcagaagacaatcgacgagttgaaatgtgcagtagacaaacgtgacgcagatatcaaaaacttacaaaagaatctcaaa gaagcagaaaccattttggctacagcaatctaccaggcgaaacagaaactcacggcaatcaaccaggccagcagtaggaa gatctcgtcagaggagctcattaagttcgctcacagaatcagtgccagtaatgctgtggcgtcccctcccacctgggcac caggtgatcaaaggcggccatatccaactgatgttgagatgagacatggaattctaggaaaattaagtgacctgccaaat aataatcctatactacagtcacagggatcatatggtgaacctatgagtagtaacagagcacagtctacaggaatcagtct tgattggaagatgatagagtttatattagcaacaaatggaccacggggatgcggcaactccgacttgacccttgtgatgt tgttagcatcccacctttaccaccatttttggcagaagagccactcaatggatagatttatttcattcttcatgttgaaa gtgatatgttttacaagagtggaacataaacttcagagtttgaactatggataa |
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Protein
| Protein ID | pfu_aug2.0_62.1_06853.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_62.1_06853.t1 MKLQTIVVNVTKKSFNWAHKGVCCDQCQTWYHIDCQNIYNDTYEILGNSNVSWYCLNCGTQNLSKSLSDMLTLVSLQNSF SVLANHDSENPLASSTPMKTVPLSTKSLQHHKQVKPGRKKNHSNAQNIKVLNINCRSIQNKKGEFYHMIDTQQPDIIVGT ESWLTPDIQNSEIFPNDLNYSVHRRDRSTNKTGGGVFVLVKNTLVSTRISDAETDCEILWVKVELKVAKPLLIGAYYKPT ENDEVSIVDLSKSLDLLRGKGNTTWLLGDFNMPHINWVNNSPSPQCKLRTLYYTFLDTLDDHELHQMVDIPTRXLCTPKR QEHKQNRELFETLALPKSQQRPDAIDSMKLIELVTHKDKEIKETLKLAAEQAEIQKTIDELKCAVDKRDADIKNLQKNLK EAETILATAIYQAKQKLTAINQASSRKISSEELIKFAHRISASNAVASPPTWAPGDQRRPYPTDVEMRHGILGKLSDLPN NNPILQSQGSYGEPMSSNRAQSTGISLDWKMIEFILATNGPRGCGNSDLTLVMLLASHLYHHFWQKSHSMDRFISFFMLK VICFTRVEHKLQSLNYG |
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