Gene
| Gene Model ID | pfu_aug2.0_62.1_06854 |
|---|---|
| Locus | scaffold62.1 : 367392 ... 369082 : - |
| To GenomeBrowser | scaffold62.1:367392..369082 |
| Genes list of scaffold | scaffold62.1 |
| Synonym | pfu_aug1.0_31466.1_55388 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| l-rhamnonate dehydratase | GO:0008152 GO:0016829 GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_62.1_06854.t1 | 1 | 1 | MR_MLE_N | 23 | 112 | 2.1e-10 | 40.6 | 6.9e-14 | 3.4e-10 | 39.9 |
| pfu_aug2.0_62.1_06854.t1 | 1 | 1 | MR_MLE | 161 | 219 | 4.5e-14 | 52.7 | 1.9e-17 | 9.5e-14 | 51.6 |
| pfu_aug2.0_62.1_06854.t1 | 2 | 1 | MR_MLE_C | 182 | 203 | 3.9e-21 | 75.1 | 0.26 | 1300.0 | -0.6 |
| pfu_aug2.0_62.1_06854.t1 | 2 | 2 | MR_MLE_C | 232 | 343 | 3.9e-21 | 75.1 | 4.0e-24 | 2.0e-20 | 72.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_62.1_06854.t1 | gi|676492350|ref|XP_009065888.1| | hypothetical protein LOTGIDRAFT_133359 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_62.1_06854.t1 | gi|167537422|ref|XP_001750380.1| | hypothetical protein [Monosiga brevicollis MX1] | 0.0 |
| pfu_aug2.0_62.1_06854.t1 | gi|676389173|ref|XP_009037865.1| | hypothetical protein AURANDRAFT_27794 [Aureococcus anophagefferens] | 0.0 |
| pfu_aug2.0_62.1_06854.t1 | gi|514681989|ref|XP_004988579.1| | L-rhamnonate dehydratase [Salpingoeca rosetta] | 0.0 |
| pfu_aug2.0_62.1_06854.t1 | gi|340368312|ref|XP_003382696.1| | PREDICTED: mitochondrial enolase superfamily member 1-like [Amphimedon queenslandica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_62.1_06854.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_62.1_06854.t1 atgtcgggatatgaacagtactcagcaactagaaagtcttggggaattaacgcccttggttccctaatcgtcgaggtaga agcagaggatgggacctgtggggtaggcatcactataggcggagaaccaggatgttttattgtggaaaatcacctcagtc gatttgttgaggggcaggatcctaggaatattgaattgatgtgggaccagatgttcagatcaactcttaattacggccga aaaggacttcctttacagtgtatcagcgcagtagatttggcactttgggatttgcttggcaaattgcgtaacgagccagt gtatgcaattcttggaggcaaaacgaaggaaaagttacctgtctattccacgacagggaggcctgacattgccaaaaaac ttggatttgttggtgcaaaattcccctgtgcatacggtccatcggctggcgatgaaggactgaggaaaaatgtcgaaatt ttcaaatctttgcgtgaaaaagtcggacctgattttcctttgatgttggactgctatatgtccttgtcagtaccgtatgc aattaaactagcgaaagctttagaaccacatggattgaagtggatggaagaattcctaccaccagatgactaccaaggtt atgaagaggtcaggaacggattgaggggatcaaatgttctcctgaccacggcggagcacgagtataccagatacggatac caactgctgctgaagtctcgatgcgtggacatcctccagcctgatataagctgggtgggaggaataaccgaggcccgccg tgttatcgccctggcctcggctagcgataccttggtcataccacatggttccagcgtgtattcatatcatcttcaatacg ccttccgaaattgtcctcttgcagaatacatcaatctcagcccaaaggctgacacaattgtaccttattttggcggatta ttccctgatgaacctttgcctgctaacggctttatcgagctgcccgacagaccaggatttggagttactctgtgtaaaga tacactcagacgtccctatgtacgctctgatgcggattccaagaaacaggctgataggaatataaactttaaaccttcgg acaaagctgttatgcctttttga |
|
Protein
| Protein ID | pfu_aug2.0_62.1_06854.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_62.1_06854.t1 MSGYEQYSATRKSWGINALGSLIVEVEAEDGTCGVGITIGGEPGCFIVENHLSRFVEGQDPRNIELMWDQMFRSTLNYGR KGLPLQCISAVDLALWDLLGKLRNEPVYAILGGKTKEKLPVYSTTGRPDIAKKLGFVGAKFPCAYGPSAGDEGLRKNVEI FKSLREKVGPDFPLMLDCYMSLSVPYAIKLAKALEPHGLKWMEEFLPPDDYQGYEEVRNGLRGSNVLLTTAEHEYTRYGY QLLLKSRCVDILQPDISWVGGITEARRVIALASASDTLVIPHGSSVYSYHLQYAFRNCPLAEYINLSPKADTIVPYFGGL FPDEPLPANGFIELPDRPGFGVTLCKDTLRRPYVRSDADSKKQADRNINFKPSDKAVMPF |
|