Gene
| Gene Model ID | pfu_aug2.0_620.1_00956 |
|---|---|
| Locus | scaffold620.1 : 61206 ... 70361 : + |
| To GenomeBrowser | scaffold620.1:61206..70361 |
| Genes list of scaffold | scaffold620.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_620.1_00956.t1 | 1 | 1 | SHS2_Rpb7-N | 13 | 79 | 1.9e-08 | 34.2 | 5.4e-12 | 4.0e-08 | 33.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_620.1_00956.t1 | gi|260826612|ref|XP_002608259.1| | hypothetical protein BRAFLDRAFT_125077 [Branchiostoma floridae] | 1.0e-36 |
| pfu_aug2.0_620.1_00956.t1 | gi|527270300|ref|XP_005153107.1| | PREDICTED: DNA-directed RNA polymerase I subunit RPA43 [Melopsittacus undulatus] | 6.0e-30 |
| pfu_aug2.0_620.1_00956.t1 | gi|589953927|ref|XP_006989598.1| | PREDICTED: DNA-directed RNA polymerase I subunit RPA43-like [Peromyscus maniculatus bairdii] | 4.0e-29 |
| pfu_aug2.0_620.1_00956.t1 | gi|488544913|ref|XP_004463996.1| | PREDICTED: DNA-directed RNA polymerase I subunit RPA43 [Dasypus novemcinctus] | 5.0e-29 |
| pfu_aug2.0_620.1_00956.t1 | gi|543740241|ref|XP_005511010.1| | PREDICTED: DNA-directed RNA polymerase I subunit RPA43, partial [Columba livia] | 6.0e-29 |
Transcript
| Transcript ID | pfu_aug2.0_620.1_00956.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_620.1_00956.t1 atgtcttgctttgagagtgttacagcttgtaaacacatagttttgtctccaaaatacttaggcagtgtaaaggatgggat aataaatcaactcgaagctgagaaaaacgtattttcagatttgttagagggtgccgtgatagcatatgacaacataaagc taaagtcttcatctggtgctattgttaatgaggagtcacatgtccattttgatatccaggctgattttattgtgtttagg cctttcgttggtgctaagttaaagggaaaggtcaacagaatattcaaacagcatgttgtttgcttggttcatgacagttt caatgctccaatacacaagcctaagggtcagacaggaggatgggaggggtcaaaccttactgttggtgaaatcattacct tcactgtcacaaatgtttacataaacaatggtgtgctgtcaatgagaggagaacttcttggttctaggagaggatcaaag aaaaaacagaagagaagaaacatgacttcagaaaataccggtgaaacagctactatagatttaacagagaatactgggga gtctggtgatgtgaatcatgactctgcgtaccatacaaactcttctatagatgaagaatggaagtcaccagggaagaaga agaaaaaaaagaaactgaagaagacatccacagaagaagaaaaagacacaggtgcaaatgttagcaatttagatacgatt tctcaaggaggtttgtctgttttaagcaatgctgactcagatgtacaaaaagcagaggaaggtgctgggatgaatgaagt tggaagtagtagggtgaagaaagcaaagaagaggaagcatgaagattctagtcttgacgcagaagaaggtagtcttagtc acattcatagtgaaaatactgaaggagaaaacagtgtggtgacagaaagtaagaaaaagcacaaaaaacacaagaaacac aaaaaagattctattgacatggagaccaaaaatgattttacgtcgataaaatcctggnagggggcatttataggaatctc cctgtacatctgtccgtctgtctgtttttattctgctaagttgccatga |
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Protein
| Protein ID | pfu_aug2.0_620.1_00956.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_620.1_00956.t1 MSCFESVTACKHIVLSPKYLGSVKDGIINQLEAEKNVFSDLLEGAVIAYDNIKLKSSSGAIVNEESHVHFDIQADFIVFR PFVGAKLKGKVNRIFKQHVVCLVHDSFNAPIHKPKGQTGGWEGSNLTVGEIITFTVTNVYINNGVLSMRGELLGSRRGSK KKQKRRNMTSENTGETATIDLTENTGESGDVNHDSAYHTNSSIDEEWKSPGKKKKKKKLKKTSTEEEKDTGANVSNLDTI SQGGLSVLSNADSDVQKAEEGAGMNEVGSSRVKKAKKRKHEDSSLDAEEGSLSHIHSENTEGENSVVTESKKKHKKHKKH KKDSIDMETKNDFTSIKSWXGAFIGISLYICPSVCFYSAKLP |
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