Gene
| Gene Model ID | pfu_aug2.0_620.1_00960 |
|---|---|
| Locus | scaffold620.1 : 125026 ... 131822 : + |
| To GenomeBrowser | scaffold620.1:125026..131822 |
| Genes list of scaffold | scaffold620.1 |
| Synonym | pfu_aug1.0_501.1_50902 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_620.1_00960.t1 | 5 | 1 | Collagen | 106 | 112 | 1.5e-30 | 104.4 | 0.046 | 110.0 | 2.3 |
| pfu_aug2.0_620.1_00960.t1 | 5 | 2 | Collagen | 178 | 235 | 1.5e-30 | 104.4 | 3.3e-13 | 8.1e-10 | 38.1 |
| pfu_aug2.0_620.1_00960.t1 | 5 | 3 | Collagen | 205 | 264 | 1.5e-30 | 104.4 | 1.5e-09 | 3.7e-06 | 26.3 |
| pfu_aug2.0_620.1_00960.t1 | 5 | 4 | Collagen | 277 | 333 | 1.5e-30 | 104.4 | 2.0e-10 | 4.9e-07 | 29.2 |
| pfu_aug2.0_620.1_00960.t1 | 5 | 5 | Collagen | 307 | 359 | 1.5e-30 | 104.4 | 1.1e-10 | 2.8e-07 | 29.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_620.1_00960.t1 | gi|501958851|ref|WP_012677560.1| | hypothetical protein [Streptococcus equi] | 1.0e-27 |
| pfu_aug2.0_620.1_00960.t1 | gi|501958582|ref|WP_012677291.1| | hypothetical protein [Streptococcus equi] | 9.0e-26 |
| pfu_aug2.0_620.1_00960.t1 | gi|426221200|ref|XP_004004798.1| | 8.0e-21 | |
| pfu_aug2.0_620.1_00960.t1 | gi|696962633|ref|XP_009569448.1| | PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(I) chain [Cuculus canorus] | 4.0e-20 |
| pfu_aug2.0_620.1_00960.t1 | gi|541971469|ref|XP_005439463.1| | PREDICTED: collagen alpha-1(I) chain-like [Falco cherrug] | 4.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_620.1_00960.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_620.1_00960.t1 atgaatctcgagaacacgttgctgcggtcacggttcacttggttgtgtataaataccggaaccctaagatttgccggttt gtccatcgacatattctccggaatgaacgcctcaattttcttagtgctccttggagctgtttgcgtgtttggcttagatt ctctggaagaccagattgaggccactcgagcacaaatagcagcgatccatcgtagaattcaggaattggaggacagacta gctagagccgaaatagatgtagaagatcaccatcgtctgaagagatctggctattactaccaatacgtcaccaagggtgc tcctggcgctccaggtaagacaacaaacaaatcttactatgtaacaaagacaatacaaaatgtacaagagattactacca atacgtcaccaagggtgctcctggcgctccaggtacgacaacaaacaaacaacaacacaaaacgaagtcaaaaatcatac tttataacaaagacaatacaatactaccaatacgtcaccaatagtgtccccggcgctccaggtcctgtaggagagaaagg agatccgggcgctcccgggcctcaaggtccaagaggcgccccgggcgaaaaaggacagcaaggcgaggtcggtgagcagg gccctccgggtccaaatggccctcatggcccacctgggccaaagggtgaagagggtgatcagggagatgttggacctcag ggcgcgccaggtgtaatgggacccgaaggggcacagggcgaaaaaggcgaaaccggagaacagggccaaccaggttaccc cggtctccccggagtagccggtgatgtcgggctccctggactaaatggtgctcccggcgaacagggaccgcagggagacc aaggagctcccggcgagcagggacgaccaggacaaatgggaggaagaggagaaaggggagacaacggtgaagcgggtaaa caaggcccggaaggtgttcaaggctacccagggtacaccgggcgtatgggtgttcgaggtaaccccggaatgccgggaga tcaaggggccatgggaagacaagggtaccaaggggccactagatacttccgtgtagcatacgcacccatggtatacgctc cagtaagatcaaagggacccgctcaagcaccagtgtacgcaccggtcagagctaaggcgccagcgcctgtgagagtggtg tacgcgcccatgagagcaaagggacccgcaccagtatacgcaccgcagtacaaatatgctccggcaccaagacctgtgaa aggttattaa |
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Protein
| Protein ID | pfu_aug2.0_620.1_00960.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_620.1_00960.t1 MNLENTLLRSRFTWLCINTGTLRFAGLSIDIFSGMNASIFLVLLGAVCVFGLDSLEDQIEATRAQIAAIHRRIQELEDRL ARAEIDVEDHHRLKRSGYYYQYVTKGAPGAPGKTTNKSYYVTKTIQNVQEITTNTSPRVLLALQVRQQTNNNTKRSQKSY FITKTIQYYQYVTNSVPGAPGPVGEKGDPGAPGPQGPRGAPGEKGQQGEVGEQGPPGPNGPHGPPGPKGEEGDQGDVGPQ GAPGVMGPEGAQGEKGETGEQGQPGYPGLPGVAGDVGLPGLNGAPGEQGPQGDQGAPGEQGRPGQMGGRGERGDNGEAGK QGPEGVQGYPGYTGRMGVRGNPGMPGDQGAMGRQGYQGATRYFRVAYAPMVYAPVRSKGPAQAPVYAPVRAKAPAPVRVV YAPMRAKGPAPVYAPQYKYAPAPRPVKGY |
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