Gene
| Gene Model ID | pfu_aug2.0_620.1_00962 |
|---|---|
| Locus | scaffold620.1 : 137106 ... 142301 : + |
| To GenomeBrowser | scaffold620.1:137106..142301 |
| Genes list of scaffold | scaffold620.1 |
| Synonym | pfu_aug1.0_501.1_50902 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_620.1_00962.t1 | 2 | 1 | Lectin_C | 23 | 129 | 4.5e-14 | 52.9 | 5.9e-17 | 2.9e-13 | 50.3 |
| pfu_aug2.0_620.1_00962.t1 | 2 | 2 | Lectin_C | 147 | 165 | 4.5e-14 | 52.9 | 0.17 | 850.0 | 0.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_620.1_00962.t1 | gi|154816107|dbj|BAF75353.1| | 4.0e-32 | |
| pfu_aug2.0_620.1_00962.t1 | gi|658876134|ref|XP_008421074.1| | PREDICTED: CD209 antigen-like protein E isoform X1 [Poecilia reticulata] | 2.0e-16 |
| pfu_aug2.0_620.1_00962.t1 | gi|658876140|ref|XP_008421076.1| | PREDICTED: CD209 antigen-like protein E isoform X2 [Poecilia reticulata] | 2.0e-16 |
| pfu_aug2.0_620.1_00962.t1 | gi|675624875|ref|XP_008940691.1| | PREDICTED: C-type lectin domain family 17, member A-like, partial [Merops nubicus] | 2.0e-16 |
| pfu_aug2.0_620.1_00962.t1 | gi|658860767|ref|XP_008413141.1| | PREDICTED: galactose-specific lectin nattectin-like [Poecilia reticulata] | 3.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_620.1_00962.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_620.1_00962.t1 atgtgcttggactgccccgtaggctgggcttcatacaatggggaatgctttcacttcagtaaatcaacagcaagctggct agacgcacaggctgcatgtagacaaatgggcggttacctagcaacggatgacaacaaggaaaaacacgactttctaacca atattgctagtgttatccattcctttggtgagactgtattttggctgggaggcgacgattacttgttcgaaggggtgtgg cgctgggaagagaccggaggacccgttgtttccttcacaaaatgggccccgggatatccaacaaacagcagcgacaccaa ctgtctgggaatggtgtttgtggacacagaactgatgtggaaggacatgacatgcggatcaagtcaccatggaaaacgac aagcaaccactgtaagaccaacgaaacatcacaaagtaacgcatgcgcatcgtacacatccgccgtcaccgaaccattac tatatctgcgagaagcaggccttccactctgctccagtcattggttaa |
|
Protein
| Protein ID | pfu_aug2.0_620.1_00962.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_620.1_00962.t1 MCLDCPVGWASYNGECFHFSKSTASWLDAQAACRQMGGYLATDDNKEKHDFLTNIASVIHSFGETVFWLGGDDYLFEGVW RWEETGGPVVSFTKWAPGYPTNSSDTNCLGMVFVDTELMWKDMTCGSSHHGKRQATTVRPTKHHKVTHAHRTHPPSPNHY YICEKQAFHSAPVIG |
|