Gene
| Gene Model ID | pfu_aug2.0_620.1_00966 |
|---|---|
| Locus | scaffold620.1 : 224977 ... 242057 : - |
| To GenomeBrowser | scaffold620.1:224977..242057 |
| Genes list of scaffold | scaffold620.1 |
| Synonym | pfu_aug1.0_2848.1_37422 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_620.1_00966.t2 | 2 | 1 | DUF59 | 38 | 115 | 5.9e-16 | 58.2 | 1.4e-19 | 1.0e-15 | 57.4 |
| pfu_aug2.0_620.1_00966.t2 | 2 | 2 | DUF59 | 133 | 142 | 5.9e-16 | 58.2 | 1.1 | 8000.0 | -3.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_620.1_00966.t2 | gi|676446019|ref|XP_009050942.1| | hypothetical protein LOTGIDRAFT_187336 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_620.1_00966.t2 | gi|583976466|ref|XP_006783593.1| | PREDICTED: mitotic spindle-associated MMXD complex subunit MIP18-like [Neolamprologus brichardi] | 0.0 |
| pfu_aug2.0_620.1_00966.t2 | gi|198282023|ref|NP_001128276.1| | mitotic spindle-associated MMXD complex subunit MIP18 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_620.1_00966.t2 | gi|57870488|gb|AAH89077.1| | LOC548360 protein, partial [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_620.1_00966.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_620.1_00966.t1 atgaattatcggatttcctctgatctgagggttaccattagtttggaccgcattttctttcgactgcagtcttttttacc tttgaactttcgacccgataccattcgaccagttcgaacaatttttgtccttacttttcgacctttcgatttgatacgta caataaatgaccccgagcatcctttgacgttagaggaactgaatgttgtggaaaatgcaaaagtgcatgtgaatgattcg gatagtagagtaagcattgagtttacacccacaattccgcactgcagtatggcaactctgattggtttatccatacgtgt gaagctacttcgctcccttccacctcgatttaaggtagatgtatccatagcaccagggacacacacatctgaagtggcca ttaacaaacagttagcagacaaagaaagagtggcagctgccctggagaatgctcatttactagaagtggttaaccagtgc ctcacaaacaacaggtcatga |
|
| Transcript ID | pfu_aug2.0_620.1_00966.t2 |
| Definition | - |
>pfu_aug2.0_620.1_00966.t2 atggaccgacaacgactggacaatgcaaatccaataatctttgaacaaagtcatgacagacaagtgttaccagaggaaga agatgatgatattgttgatgaaatagatgatagagagatttttgatttgatacgtacaataaatgaccccgagcatcctt tgacgttagaggaactgaatgttgtggaaaatgcaaaagtgcatgtgaatgattcggatagtagagtaagcattgagttt acacccacaattccgcactgcagtatggcaactctgattggtttatccatacgtgtgaagctacttcgctcccttccacc tcgatttaaggtagatgtatccatagcaccagggacacacacatctgaagtggccattaacaaacagttagcagacaaag aaagagtggcagctgccctggagaatgctcatttactagaagtggttaaccagtgcctcacaaacaacaggtcatga |
|
Protein
| Protein ID | pfu_aug2.0_620.1_00966.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_620.1_00966.t1 MNYRISSDLRVTISLDRIFFRLQSFLPLNFRPDTIRPVRTIFVLTFRPFDLIRTINDPEHPLTLEELNVVENAKVHVNDS DSRVSIEFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKVDVSIAPGTHTSEVAINKQLADKERVAAALENAHLLEVVNQC LTNNRS |
|
| Protein ID | pfu_aug2.0_620.1_00966.t2 |
| Definition | - |
>pfu_aug2.0_620.1_00966.t2 MDRQRLDNANPIIFEQSHDRQVLPEEEDDDIVDEIDDREIFDLIRTINDPEHPLTLEELNVVENAKVHVNDSDSRVSIEF TPTIPHCSMATLIGLSIRVKLLRSLPPRFKVDVSIAPGTHTSEVAINKQLADKERVAAALENAHLLEVVNQCLTNNRS |
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