Gene
| Gene Model ID | pfu_aug2.0_621.1_04404 |
|---|---|
| Locus | scaffold621.1 : 1 ... 57095 : - |
| To GenomeBrowser | scaffold621.1:1..57095 |
| Genes list of scaffold | scaffold621.1 |
| Synonym | pfu_aug1.0_16706.1_18371 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| c-type lectin domain family 4 member m-like isoform x1 | GO:0043412 GO:0044238 GO:0044260 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_621.1_04404.t1 | 4 | 1 | Lectin_C | 170 | 202 | 7.3e-21 | 74.7 | 0.00039 | 1.5 | 9.5 |
| pfu_aug2.0_621.1_04404.t1 | 4 | 2 | Lectin_C | 264 | 338 | 7.3e-21 | 74.7 | 5.8e-06 | 0.021 | 15.4 |
| pfu_aug2.0_621.1_04404.t1 | 4 | 3 | Lectin_C | 525 | 588 | 7.3e-21 | 74.7 | 4.5e-08 | 0.00017 | 22.2 |
| pfu_aug2.0_621.1_04404.t1 | 4 | 4 | Lectin_C | 599 | 666 | 7.3e-21 | 74.7 | 3.2e-08 | 0.00012 | 22.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_621.1_04404.t1 | gi|401412798|ref|XP_003885846.1| | conserved hypothetical protein [Neospora caninum Liverpool] | 3.0e-12 |
| pfu_aug2.0_621.1_04404.t1 | gi|156093512|ref|XP_001612795.1| | hypothetical protein [Plasmodium vivax Sal-1] | 1.0e-07 |
| pfu_aug2.0_621.1_04404.t1 | gi|126138999|ref|XP_001386022.1| | hypothetical protein PICST_33213 [Scheffersomyces stipitis CBS 6054] | 2.0e-06 |
| pfu_aug2.0_621.1_04404.t1 | gi|697431161|ref|XP_009668602.1| | PREDICTED: C-type lectin domain family 17, member A-like isoform X2 [Struthio camelus australis] | 3.0e-06 |
| pfu_aug2.0_621.1_04404.t1 | gi|699585034|ref|XP_009864303.1| | PREDICTED: C-type mannose receptor 2-like, partial [Apaloderma vittatum] | 5.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_621.1_04404.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_621.1_04404.t1 atggtcattatccatatttgtcatcttaagaatgcgctggtacaaggatgtagatttgtcaagtaccaagccaagtgtcc gtctggtgacattaggatcatatcaacggtacaaaaggcgtttgatgaagcatttttgatggctatgctgtctacctttg atccttcaaattttgtgaaagtgactgttgtgatagagggttctctagctgcatataaaacataccaaaactcttgtcaa caaagcactgctgattacttcgggagtttcagcgagttccatgcttactcgtcgttagaatgttccatgtactgtgctaa aaagaatcattgcttgggattccagtacaaagacaatgtgtgtaaacttgtgtcctacttttgggaagatgacacagata gaattcctgatttagacttctcaaactgctttgtggacagtgagagcgcagagaatgactatattctaaacaaacagctg aatgtttgctttaagttttatgacatcccaatgaatagacatgaagccgcacagcaatgttttactgacgggggaatact tattacagtagatagtcgggcaaaaaatgatttcgtgagacaagtgaaagtgccacaatatgatgccagaataatttcac aagatgatgccagaatagtgccacaagatgatgctagaatagtgccacaagatgatgccagaatagtgccacaagatgat tccagaatagtgccacaagatgatgccagaatagtgccacaagatgctgccagactagtgcaacaatatgatatcacact gtttctacaagatattgtcacaaaggtgccacaacgtattaagtatgccacgatctacattggggcgtcagacattgtcc atgaaggagaccatagatgggaagatgatagtcctgttgtttacgatgatttctacgatcaacagccaaacaactacgac caagattaccccattaaacaggccgattgtgtcgtgttcggtgaacaatgggatgacccatcattagcagaaaatgagac ctacagatatggaaagaaggacgtgatccaaaatagcagttcaaacggcatagaagcggagagcagaaataagaatgagg tgttcatattactatgggcgtcaaaagacaacatgatatccaaatatgtcgctgaattaacggtctctgccgtttcttta acttcaagttcatatagattgcgccaaggtttgtgcttacaatcaagcatccttcacttacgtaaaaatggtcatggtaa cgttcccggaatgtttgatgatgagtgcactccacagacatgttctctagctgctagtaaactatatcaaaacgcttgtc agcaaagcactgctgattacttcgggagtttccaagagttcgacgctctctcatcgttagtatgctccatgacctgtgta aagaagagtcactgcttgggattccagtacaaaggaaatatctgtaaactggtgtcttacttttgggaagatgacattga tacaattcttgatttagacttctcaaactgctttctggacagtggtattttaaagattgacaagatctatatcggagcat cagacattgccaatgagggagactggagatgggaagatggaagtcctgtagtttaccactttttctacagtaaacagcct aacaacagggaccaagattacccgtcagagcaggcccattgcgccgtgttcgctttacgatgggatgatgtatattgtgg aaaagcatatctcatgaatcattttacatatctaatgcaaagtattttaaagattgacaagatctatatcggagcatcag acattgccaatgagggagactggagatgggaagatggaagtcctgtagtttaccactttttctacagtaaacagcctaac aacagggaccaagattacccgtcagagcaggcccattgcgccgtgttcgctttacgatgggatgatgtatattgtggaaa agc |
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Protein
| Protein ID | pfu_aug2.0_621.1_04404.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_621.1_04404.t1 MVIIHICHLKNALVQGCRFVKYQAKCPSGDIRIISTVQKAFDEAFLMAMLSTFDPSNFVKVTVVIEGSLAAYKTYQNSCQ QSTADYFGSFSEFHAYSSLECSMYCAKKNHCLGFQYKDNVCKLVSYFWEDDTDRIPDLDFSNCFVDSESAENDYILNKQL NVCFKFYDIPMNRHEAAQQCFTDGGILITVDSRAKNDFVRQVKVPQYDARIISQDDARIVPQDDARIVPQDDARIVPQDD SRIVPQDDARIVPQDAARLVQQYDITLFLQDIVTKVPQRIKYATIYIGASDIVHEGDHRWEDDSPVVYDDFYDQQPNNYD QDYPIKQADCVVFGEQWDDPSLAENETYRYGKKDVIQNSSSNGIEAESRNKNEVFILLWASKDNMISKYVAELTVSAVSL TSSSYRLRQGLCLQSSILHLRKNGHGNVPGMFDDECTPQTCSLAASKLYQNACQQSTADYFGSFQEFDALSSLVCSMTCV KKSHCLGFQYKGNICKLVSYFWEDDIDTILDLDFSNCFLDSGILKIDKIYIGASDIANEGDWRWEDGSPVVYHFFYSKQP NNRDQDYPSEQAHCAVFALRWDDVYCGKAYLMNHFTYLMQSILKIDKIYIGASDIANEGDWRWEDGSPVVYHFFYSKQPN NRDQDYPSEQAHCAVFALRWDDVYCGK |
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