Gene
| Gene Model ID | pfu_aug2.0_623.1_11005 |
|---|---|
| Locus | scaffold623.1 : 105826 ... 135573 : + |
| To GenomeBrowser | scaffold623.1:105826..135573 |
| Genes list of scaffold | scaffold623.1 |
| Synonym | pfu_aug1.0_155.1_57998 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna topoisomerase 2-binding protein 1 | GO:0043229 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_623.1_11005.t1 | 8 | 1 | BRCT | 22 | 38 | 0.0 | 180.9 | 0.7 | 3500.0 | -1.8 |
| pfu_aug2.0_623.1_11005.t1 | 8 | 2 | BRCT | 106 | 167 | 0.0 | 180.9 | 6.8e-12 | 3.3e-08 | 33.5 |
| pfu_aug2.0_623.1_11005.t1 | 7 | 1 | PTCB-BRCT | 109 | 166 | 0.0 | 195.4 | 1.3e-13 | 6.3e-10 | 38.7 |
| pfu_aug2.0_623.1_11005.t1 | 8 | 3 | BRCT | 197 | 270 | 0.0 | 180.9 | 2.4e-16 | 1.2e-12 | 47.7 |
| pfu_aug2.0_623.1_11005.t1 | 7 | 2 | PTCB-BRCT | 202 | 265 | 0.0 | 195.4 | 1.3e-21 | 6.5e-18 | 64.3 |
| pfu_aug2.0_623.1_11005.t1 | 7 | 3 | PTCB-BRCT | 318 | 336 | 0.0 | 195.4 | 1.7 | 8300.0 | -3.3 |
| pfu_aug2.0_623.1_11005.t1 | 8 | 4 | BRCT | 391 | 437 | 0.0 | 180.9 | 2.4e-08 | 0.00012 | 22.1 |
| pfu_aug2.0_623.1_11005.t1 | 7 | 4 | PTCB-BRCT | 396 | 436 | 0.0 | 195.4 | 8.6e-07 | 0.0043 | 16.8 |
| pfu_aug2.0_623.1_11005.t1 | 8 | 5 | BRCT | 496 | 529 | 0.0 | 180.9 | 0.0025 | 12.0 | 6.0 |
| pfu_aug2.0_623.1_11005.t1 | 7 | 5 | PTCB-BRCT | 567 | 630 | 0.0 | 195.4 | 2.5e-14 | 1.2e-10 | 41.0 |
| pfu_aug2.0_623.1_11005.t1 | 8 | 6 | BRCT | 567 | 634 | 0.0 | 180.9 | 7.7e-10 | 3.8e-06 | 26.9 |
| pfu_aug2.0_623.1_11005.t1 | 8 | 7 | BRCT | 929 | 1003 | 0.0 | 180.9 | 8.1e-11 | 4.0e-07 | 30.0 |
| pfu_aug2.0_623.1_11005.t1 | 7 | 6 | PTCB-BRCT | 941 | 999 | 0.0 | 195.4 | 1.3e-08 | 6.4e-05 | 22.7 |
| pfu_aug2.0_623.1_11005.t1 | 7 | 7 | PTCB-BRCT | 1247 | 1286 | 0.0 | 195.4 | 1.7e-05 | 0.085 | 12.7 |
| pfu_aug2.0_623.1_11005.t1 | 8 | 8 | BRCT | 1247 | 1287 | 0.0 | 180.9 | 0.0034 | 17.0 | 5.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_623.1_11005.t1 | gi|676465787|ref|XP_009057356.1| | hypothetical protein LOTGIDRAFT_233309 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_623.1_11005.t1 | gi|663268725|ref|XP_008494236.1| | PREDICTED: DNA topoisomerase 2-binding protein 1 [Calypte anna] | 0.0 |
| pfu_aug2.0_623.1_11005.t1 | gi|733893143|ref|XP_010711241.1| | PREDICTED: DNA topoisomerase 2-binding protein 1 [Meleagris gallopavo] | 0.0 |
| pfu_aug2.0_623.1_11005.t1 | gi|514474271|ref|XP_003476544.2| | PREDICTED: DNA topoisomerase 2-binding protein 1 [Cavia porcellus] | 0.0 |
| pfu_aug2.0_623.1_11005.t1 | gi|260805410|ref|XP_002597580.1| | hypothetical protein BRAFLDRAFT_82314 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_623.1_11005.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_623.1_11005.t1 atgggtgacggctttaagatcttcctggtgacctcaggggaggatccagtacgtgatgccacctcatcaatgaaagaggc agaaaagaaactgaaggagaatggttttatcacaaaatggctgcctgaatctgagtgtgaaaaggtcaaacagaaggaga aggatcgtacctacttgtttgatccattcgatacagaagcctttaaccatgtcagaagtgtaggttgtaggatactgggt cctcagtgcatccttacatccttgcagtttcaaatggacataccacggcgttctatccccatctataatctggccatgaa agacttggtggtatgctgtagtaacatagatcaaaaagtcagggaagatattcaccagaaagtggaatatatgggtggat catataaaaaggactttacagacattgtgacacatcttattgtgggggaggtgggcagtaagaaataccaggtggcaggt gacctaggcaaacagatcatgttggctccatgggtcaatgctgtacttgaagcctcaagagaaaaatatatacacggtac agatgacgtcttccaggagtacgtgtgtcctgtgtttaaaagtttggtggtcaccgtgtctggcctggactcggaggaac gtaatattgtccgcaaaactgtagagagtaatggaggaaaatactcaggggagatgaaagtgaacgagtgtacgcatctt attataaacaaaccaaaaggaactaaatatagctttgctaagaagtggaagatccacattgtacgttcagattggctgta tgactctgtagaacgaggttattgtctggacgagaggaaattctctgtagatggcgactctggaagcgatgataaatcca gcgttaaaacttcaactccagaaaaagaagatgctaatagaacacgaatgtcaaccatcgccgatatcagctgtatcaca aacatgtcaaccaatcagcattcacacatcaacgaaaccacggccagtaaccatggcaaccatcaaaacacatccctcag tgaaaccattgaaccagacaggaggaaatcagaggcaaagaactctgaggtcaaacggtcaaggtcaataatggaagaga tggaagaatcaataaaagacatagacctgaccaaaacacccgatgatatgtttcttgatggatgtaagatctacttgagt ggatttcgtggtgctgccttagaaaagctgagaaaagtcatcaatgccggcgggggaatcaggttaaaccagcttagtga gaatgttacccatgtagttattagggagagagtagagtcagacatagagacacttaaaacagctacatacagagggatgg caggatcaagggagactaccgtggttaaccagaatcctccaccagagggcagtcaagaccaagatgacgatctcacacag gatccaaacaaagtttcagctatggaaacagaggacactcctgaggggaagatattttggaagaagacgttcttgttgtt tggatttatagaggaatcggagaaagaattagttgattttatatcggaaaaaggaggtaaagtcttaccccatacgactc gtacagtacctgactatggcatggtgcctatggatggcttcccagtagacaggactgtaggagaaatagtcacaaatgct tggctggctagatacattggatattcaggtacagagagggactgccttatttacatagctgaacttctaggtgcaaggta ccaggagttttttgtgaggaaggctaacaagtcattagaagctaacacacacttagtagtcagggaggcagatggatcaa agtacacagccgccaaaaaatggggcatcccagctctgtctaaacggtggctgtttgcttgtgccaaatctggtaaagta gagccagaagatagttaccacatagactgtatgccagaaaaaaacgatcaaagtcagtcagggaaactcgataaacaagg ggcagataactctgttacaaacgacaggagacaaagtgctaaaaatagtgatgagctagaacaaaatatgcaaaataaac gtgaaaacaatagaagtagaagtgatgtgaacgacaaaattacagaatggcagcaaaaaataggtaaccatgacaataat gcagatggtaaccatgacaacgaaatggacgttgaccctgctgacaataaccaaaatgtgtcggaaaatatgcatgtaga agagcaagaaagggacagaaaaagtgagcaaagtaatgaaaatgaggggtcaaatgttcgtgataatgaggtcaaagttc agtcacctgaggtcaaagatcaatcacctatggaaagtgctgtgcaggaaaatggatcaaggacaagccagaaggagaac attgggttcagggacacacctgtagctcagaaccaaagggtcaaggagttacaagggagctctaagataacacccaagaa ttcacggacaaagaaagacgagcttgagacgccatctccaacccgcttcatggatcttactagaccattcagaccaaaat ttgatctcactgatttacaaaagtttcttgagactccagaacctgagaggaaaaaacgtgaagaggagagaaaaaacaaa aggtccagtctgtctttggaggaagtgtttgcattccatcttgacaaagctgttaaatttacatctcaatacaagaaaaa atcagtagacatggagggcatggaggaggagggagaagtctttatacctgaccagatgaaggcaggtccactacaaggtg tcattatagcagtagccaagaagctgagttcagaacagagcgagttaaacaacatcgtagacagtctgggtggggactat agatggcagtatgactcatcctgtactcactttatattccagggtagagctaatgacacaaccaaggagttccgagtggc tcgagatcagaaaaagacaatcgtttctcctcactggctctatatgtgcaaagaacaaaatacccgagttgatgagtcgt cctttccacataattataaccccaacctaacgctggcaggtttgtccaataaaaaggcttcctcacctgctaggtcaaca cgccggtccgtcagaaacacaccagcttcatcgttagcctccgagagcacgccaagcacagtaacacggagcaaacaggg agctgtagaacaaaaacaaaagtcaccaattgtcaactcaaaacctgaacgatctccaaagcctggtccagcaaaggaca attcaatggtagatgggccatcaggggatgcagacacagctgatcattctgatggaaatgagaagggagatgtcagtgtt gccatggaagtgggagggactttggacatgagggtggagcttaacaaacagctggaggatttaatggcagctaataagtt agaacaggaacgtttagcagatcgcttggcccgggctatgagccctacacaggacatgaacgtagatctgggagcggagt tttctgatgtagaagaagatgaacaagccctggccaacatggaggacgctcagcaactgcaaggtgaggacaaaaaagaa gagaccagagttcccacaccagaggcgccccctatcgctttccctgtaaacaaacagtctactcatgtagagcctcccaa acctattgtattggatgatgaggaaaatgtacaacaagaaaaccgtccaccacctgtgttcatgctctctggtctcagtc aagaggagagagtagattttggtgctttgatagagagtttaggtggtaagatgttagatacccagcattatgaggcagca tgtacccatcttgtaataggactgtttgaggtgtctagtagagaatggagtgatctgtgtaaagccggagtttatagccg cacatttaacggaccagccggcacctag |
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Protein
| Protein ID | pfu_aug2.0_623.1_11005.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_623.1_11005.t1 MGDGFKIFLVTSGEDPVRDATSSMKEAEKKLKENGFITKWLPESECEKVKQKEKDRTYLFDPFDTEAFNHVRSVGCRILG PQCILTSLQFQMDIPRRSIPIYNLAMKDLVVCCSNIDQKVREDIHQKVEYMGGSYKKDFTDIVTHLIVGEVGSKKYQVAG DLGKQIMLAPWVNAVLEASREKYIHGTDDVFQEYVCPVFKSLVVTVSGLDSEERNIVRKTVESNGGKYSGEMKVNECTHL IINKPKGTKYSFAKKWKIHIVRSDWLYDSVERGYCLDERKFSVDGDSGSDDKSSVKTSTPEKEDANRTRMSTIADISCIT NMSTNQHSHINETTASNHGNHQNTSLSETIEPDRRKSEAKNSEVKRSRSIMEEMEESIKDIDLTKTPDDMFLDGCKIYLS GFRGAALEKLRKVINAGGGIRLNQLSENVTHVVIRERVESDIETLKTATYRGMAGSRETTVVNQNPPPEGSQDQDDDLTQ DPNKVSAMETEDTPEGKIFWKKTFLLFGFIEESEKELVDFISEKGGKVLPHTTRTVPDYGMVPMDGFPVDRTVGEIVTNA WLARYIGYSGTERDCLIYIAELLGARYQEFFVRKANKSLEANTHLVVREADGSKYTAAKKWGIPALSKRWLFACAKSGKV EPEDSYHIDCMPEKNDQSQSGKLDKQGADNSVTNDRRQSAKNSDELEQNMQNKRENNRSRSDVNDKITEWQQKIGNHDNN ADGNHDNEMDVDPADNNQNVSENMHVEEQERDRKSEQSNENEGSNVRDNEVKVQSPEVKDQSPMESAVQENGSRTSQKEN IGFRDTPVAQNQRVKELQGSSKITPKNSRTKKDELETPSPTRFMDLTRPFRPKFDLTDLQKFLETPEPERKKREEERKNK RSSLSLEEVFAFHLDKAVKFTSQYKKKSVDMEGMEEEGEVFIPDQMKAGPLQGVIIAVAKKLSSEQSELNNIVDSLGGDY RWQYDSSCTHFIFQGRANDTTKEFRVARDQKKTIVSPHWLYMCKEQNTRVDESSFPHNYNPNLTLAGLSNKKASSPARST RRSVRNTPASSLASESTPSTVTRSKQGAVEQKQKSPIVNSKPERSPKPGPAKDNSMVDGPSGDADTADHSDGNEKGDVSV AMEVGGTLDMRVELNKQLEDLMAANKLEQERLADRLARAMSPTQDMNVDLGAEFSDVEEDEQALANMEDAQQLQGEDKKE ETRVPTPEAPPIAFPVNKQSTHVEPPKPIVLDDEENVQQENRPPPVFMLSGLSQEERVDFGALIESLGGKMLDTQHYEAA CTHLVIGLFEVSSREWSDLCKAGVYSRTFNGPAGT |
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