Gene
| Gene Model ID | pfu_aug2.0_623.1_11007 |
|---|---|
| Locus | scaffold623.1 : 145715 ... 153335 : - |
| To GenomeBrowser | scaffold623.1:145715..153335 |
| Genes list of scaffold | scaffold623.1 |
| Synonym | pfu_aug1.0_155.1_57996 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| aggrecan core protein isoform x2 | GO:0005488 GO:0009628 GO:0010033 GO:0030203 GO:0031012 GO:0044237 GO:0044281 GO:0044763 GO:0051216 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_623.1_11007.t1 | 1 | 1 | Lectin_C | 89 | 209 | 1.5e-16 | 60.8 | 2.2e-20 | 3.2e-16 | 59.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_623.1_11007.t1 | gi|667253709|ref|XP_008564934.1| | PREDICTED: aggrecan core protein isoform X2 [Galeopterus variegatus] | 2.0e-19 |
| pfu_aug2.0_623.1_11007.t1 | gi|206105|gb|AAA41836.1| | proteoglycan, partial [Rattus norvegicus] | 9.0e-19 |
| pfu_aug2.0_623.1_11007.t1 | gi|223462185|gb|AAI50625.1| | ACAN protein [Homo sapiens] | 9.0e-19 |
| pfu_aug2.0_623.1_11007.t1 | gi|637371870|ref|XP_003229822.2| | PREDICTED: aggrecan core protein [Anolis carolinensis] | 1.0e-18 |
Transcript
| Transcript ID | pfu_aug2.0_623.1_11007.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_623.1_11007.t1 atgtcgaaactagatataagcagccaataccttatagataaaacaagaaccaaagcaaacaaacaaaaacctccaccatg tgaaaagaagcaaacacccaaaatgggaatgagaccaggtgcccaagaagatccagcatctcctgcttgcatgcaacacc cgtcacttcaattcggtagaattgtcacatccgctcaatcaaactcggaatgcgacatcggttggcatgaaaatcaagga atgtgttatctgtttacagaaatcaaatcgtcttggattgatgcaattaattactgtaagctgtttcagtccacactttt agagataaatagtccctctgagcagcagttcattacaaatactagtatcgcattgcatcgaaaagcatcactgacttttc aacagaaggtagccgagtcttattggataggactaaatgatatagagaaggaaggtcattactactgggcttctgaacat caacagatgacgtatacctactgggcacctggggaacccgtcacagatccagggcttaactctgattgcgtggagctggc aggacacttcaactatatgtggaatgacgctccgtgtgacgcaaagattcacttcatttgtgaaaaagaatctgaaatgg ataatagtggaataatcattgggtag |
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Protein
| Protein ID | pfu_aug2.0_623.1_11007.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_623.1_11007.t1 MSKLDISSQYLIDKTRTKANKQKPPPCEKKQTPKMGMRPGAQEDPASPACMQHPSLQFGRIVTSAQSNSECDIGWHENQG MCYLFTEIKSSWIDAINYCKLFQSTLLEINSPSEQQFITNTSIALHRKASLTFQQKVAESYWIGLNDIEKEGHYYWASEH QQMTYTYWAPGEPVTDPGLNSDCVELAGHFNYMWNDAPCDAKIHFICEKESEMDNSGIIIG |
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