Gene
| Gene Model ID | pfu_aug2.0_623.1_11009 |
|---|---|
| Locus | scaffold623.1 : 160306 ... 163165 : + |
| To GenomeBrowser | scaffold623.1:160306..163165 |
| Genes list of scaffold | scaffold623.1 |
| Synonym | pfu_aug1.0_155.1_57994 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_623.1_11009.t1 | 2 | 1 | zf-B_box | 11 | 43 | 5.3e-08 | 32.6 | 1.3e-10 | 3.3e-07 | 30.0 |
| pfu_aug2.0_623.1_11009.t1 | 2 | 2 | zf-B_box | 335 | 345 | 5.3e-08 | 32.6 | 1.1 | 2600.0 | -1.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_623.1_11009.t1 | gi|585646240|ref|XP_006811695.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Saccoglossus kowalevskii] | 3.0e-06 |
| pfu_aug2.0_623.1_11009.t1 | gi|260787425|ref|XP_002588753.1| | hypothetical protein BRAFLDRAFT_89820 [Branchiostoma floridae] | 7.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_623.1_11009.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_623.1_11009.t1 atgacaactaggttcagagtacaagctgcgcttcctacatgttctgaccatcccagtgaagatctagattccttctgtga cacatgtaagaagcgaatttgcgagctttgctgcaaaggagaacacaaggcagatgactggagcagagccaaaaaggttg taagagaaataaggcaaaatggcggagaaagatctggagaagtcaagaatctgataaaaggaatgaagaagaaaaagaag acatcatctagaaaggtcaaagctaatctagaaagtattgagacgactcaaaagttgctagtcggtcttattgacgaaca agctgatagattaaaagcaaaagtgaaagagggaaagaagacaaaagatttgctgtctaaaggaatcaaagatttcaaag cactcctagattttttcgagaatcatctttactcagcggatgacaatgttgtcatagagatggaagagcagtttcacaaa ttgaaagacatgttttctgaaagccaaataagagacaagagattgcagtttatacagggaccgattgatcccgacacaat aaaaaggatgtttggcgaggtgttagagtcaagtagacttaaatttgaagtcacaaaaacatctaatttcactcaccata gtggaatatccatacagactatatgcccaatcacaagggatgaggcaatggtgcacgaagagagatccgatcgagtggaa catttacaaattacagggatgaccttaaatgtgaaacactttccatccacaatcaacgactttgtcatgtgccaccagga ttccatagtttacactcagtctcaggacaaaatggttcgaagtttttcatcatctggcataatgattgacgtgtattcaa ccgttcctcttcatcctagtagcatatgcaggtcgagagatggtggttttcttgtctgtttgtctgatagtacctatatc agtgaaggaagtaagggagaagttcaccatattaatggaaacggcaaaccacttaagaagtattgtcgtacagagggaga tgaaacaaaccttttgacatgccccaagaaagtgtgtcaaaatgtcaaccttgatctttgcatccttcagtatctagaaa aggagtttaaaccaggattgctggtaatatccaatggatccaaattcagatttacgtactccggattacccgaactttca agatttaagcctgatgacgtttgttgcgaccagcttggccgaatactgatgtgcgattatctcacaaatacaatccattt gctacatgaggatggcgatttcctccaatatttggcgacgaacaatactccttctggacccaggtcaattgctctactag acgacatgatgtgggttggatgttacaacggtatcatcagagtgtacaagtacggcgaaaaagaagattga |
|
Protein
| Protein ID | pfu_aug2.0_623.1_11009.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_623.1_11009.t1 MTTRFRVQAALPTCSDHPSEDLDSFCDTCKKRICELCCKGEHKADDWSRAKKVVREIRQNGGERSGEVKNLIKGMKKKKK TSSRKVKANLESIETTQKLLVGLIDEQADRLKAKVKEGKKTKDLLSKGIKDFKALLDFFENHLYSADDNVVIEMEEQFHK LKDMFSESQIRDKRLQFIQGPIDPDTIKRMFGEVLESSRLKFEVTKTSNFTHHSGISIQTICPITRDEAMVHEERSDRVE HLQITGMTLNVKHFPSTINDFVMCHQDSIVYTQSQDKMVRSFSSSGIMIDVYSTVPLHPSSICRSRDGGFLVCLSDSTYI SEGSKGEVHHINGNGKPLKKYCRTEGDETNLLTCPKKVCQNVNLDLCILQYLEKEFKPGLLVISNGSKFRFTYSGLPELS RFKPDDVCCDQLGRILMCDYLTNTIHLLHEDGDFLQYLATNNTPSGPRSIALLDDMMWVGCYNGIIRVYKYGEKED |
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